Analysis of interatomic Contacts of Structural Units in PDB entry:
1JS2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JS2 entry

There are 4 chains in PDB entry 1JS2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 89
B
 MET 101GLY 189
C
 MET 201GLY 289
D
 MET 301GLY 389
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 1JS2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 21Right-handed alpha
Helix 2
2
A
26 30Right-handed 310
Helix 3
3
A
31 36Right-handed alpha
Helix 4
4
A
41 45Right-handed 310
Helix 5
5
A
46 50Right-handed 310
Helix 6
6
B
115 122Right-handed alpha
Helix 7
7
B
126 130Right-handed 310
Helix 8
8
B
131 136Right-handed alpha
Helix 9
9
B
141 145Right-handed 310
Helix 10
10
B
146 150Right-handed 310
Helix 11
11
C
215 222Right-handed alpha
Helix 12
12
C
226 230Right-handed 310
Helix 13
13
C
231 236Right-handed alpha
Helix 14
14
C
241 245Right-handed 310
Helix 15
15
C
246 250Right-handed 310
Helix 16
16
D
315 321Right-handed alpha
Helix 17
17
D
326 330Right-handed 310
Helix 18
18
D
331 336Right-handed alpha
Helix 19
19
D
341 345Right-handed 310
Helix 20
20
D
346 350Right-handed 310
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There are 4 sheets in PDB entry 1JS2. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 54first strand
Strand 2
A
64 67anti-parallel
Strand 3
A
75 76anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
153 154first strand
Strand 2
B
164 167anti-parallel
Strand 3
B
175 176anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
253 254first strand
Strand 2
C
264 267anti-parallel
Strand 3
C
275 276anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
353 354first strand
Strand 2
D
364 367anti-parallel
Strand 3
D
375 376anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il