Analysis of interatomic Contacts of Structural Units in PDB entry:
1JS6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JS6 entry

There are 2 chains in PDB entry 1JS6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 476
B
 MET 1ALA 476
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 1JS6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 24Right-handed alpha
Helix 2
2
A
25 27Right-handed 310
Helix 3
3
A
38 42Right-handed 310
Helix 4
4
A
52 63Right-handed alpha
Helix 5
5
A
64 68Right-handed 310
Helix 6
6
A
85 99Right-handed alpha
Helix 7
7
A
104 107Right-handed 310
Helix 8
8
A
108 127Right-handed alpha
Helix 9
9
A
129 133Right-handed 310
Helix 10
10
A
147 169Right-handed alpha
Helix 11
11
A
175 182Right-handed alpha
Helix 12
12
A
193 203Right-handed alpha
Helix 13
13
A
218 232Right-handed alpha
Helix 14
14
A
253 264Right-handed alpha
Helix 15
15
A
274 280Right-handed 310
Helix 16
16
A
281 286Right-handed alpha
Helix 17
17
A
287 289Right-handed 310
Helix 18
18
A
290 294Right-handed 310
Helix 19
19
A
300 305Right-handed alpha
Helix 20
20
A
318 324Right-handed alpha
Helix 21
21
A
325 327Right-handed 310
Helix 22
22
A
345 349Right-handed 310
Helix 23
23
A
358 395Right-handed alpha
Helix 24
24
A
416 431Right-handed alpha
Helix 25
25
A
456 476Right-handed alpha
Helix 26
26
B
2 24Right-handed alpha
Helix 27
27
B
25 27Right-handed 310
Helix 28
28
B
38 42Right-handed 310
Helix 29
29
B
52 63Right-handed alpha
Helix 30
30
B
64 68Right-handed 310
Helix 31
31
B
85 99Right-handed alpha
Helix 32
32
B
104 107Right-handed 310
Helix 33
33
B
108 127Right-handed alpha
Helix 34
34
B
129 133Right-handed 310
Helix 35
35
B
147 171Right-handed alpha
Helix 36
36
B
175 182Right-handed alpha
Helix 37
37
B
193 203Right-handed alpha
Helix 38
38
B
218 232Right-handed alpha
Helix 39
39
B
253 264Right-handed alpha
Helix 40
40
B
274 280Right-handed 310
Helix 41
41
B
281 286Right-handed alpha
Helix 42
42
B
287 289Right-handed 310
Helix 43
43
B
290 294Right-handed 310
Helix 44
44
B
300 305Right-handed alpha
Helix 45
45
B
318 324Right-handed alpha
Helix 46
46
B
325 327Right-handed 310
Helix 47
47
B
345 349Right-handed 310
Helix 48
48
B
358 395Right-handed alpha
Helix 49
49
B
416 431Right-handed alpha
Helix 50
50
B
456 476Right-handed alpha
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There are 4 sheets in PDB entry 1JS6. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 145first strand
Strand 2
A
312 316anti-parallel
Strand 3
A
296 299anti-parallel
Strand 4
A
267 271parallel
Strand 5
A
235 242parallel
Strand 6
A
183 188parallel
Strand 7
A
205 209parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
398 400first strand
Strand 2
A
408 413anti-parallel
Strand 3
A
443 449anti-parallel
Strand 4
A
436 440anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
141 145first strand
Strand 2
B
312 316anti-parallel
Strand 3
B
296 299anti-parallel
Strand 4
B
267 271parallel
Strand 5
B
235 242parallel
Strand 6
B
183 188parallel
Strand 7
B
205 209parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
398 400first strand
Strand 2
B
408 413anti-parallel
Strand 3
B
443 449anti-parallel
Strand 4
B
436 440anti-parallel
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