Analysis of interatomic Contacts of Structural Units in PDB entry:
1JS8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JS8 entry

There are 2 chains in PDB entry 1JS8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2503ALA 2892
B
 ALA 2503ALA 2892
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 1JS8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2508 2512Right-handed 310
Helix 2
2
A
2513 2530Right-handed alpha
Helix 3
3
A
2535 2541Right-handed alpha
Helix 4
4
A
2566 2585Right-handed alpha
Helix 5
5
A
2604 2609Right-handed alpha
Helix 6
6
A
2632 2636Right-handed 310
Helix 7
7
A
2645 2657Right-handed alpha
Helix 8
8
A
2659 2680Right-handed alpha
Helix 9
9
A
2691 2695Right-handed 310
Helix 10
10
A
2696 2720Right-handed alpha
Helix 11
11
A
2731 2735Right-handed 310
Helix 12
12
A
2747 2753Right-handed alpha
Helix 13
13
A
2755 2759Right-handed 310
Helix 14
14
A
2761 2765Right-handed 310
Helix 15
15
A
2773 2777Right-handed 310
Helix 16
16
A
2778 2790Right-handed alpha
Helix 17
17
A
2848 2855Right-handed alpha
Helix 18
18
A
2878 2882Right-handed 310
Helix 19
19
B
2508 2512Right-handed 310
Helix 20
20
B
2513 2530Right-handed alpha
Helix 21
21
B
2535 2541Right-handed alpha
Helix 22
22
B
2566 2585Right-handed alpha
Helix 23
23
B
2604 2609Right-handed alpha
Helix 24
24
B
2632 2636Right-handed 310
Helix 25
25
B
2645 2657Right-handed alpha
Helix 26
26
B
2659 2680Right-handed alpha
Helix 27
27
B
2691 2695Right-handed 310
Helix 28
28
B
2696 2720Right-handed alpha
Helix 29
29
B
2747 2753Right-handed alpha
Helix 30
30
B
2754 2754Right-handed 310
Helix 31
31
B
2755 2759Right-handed 310
Helix 32
32
B
2761 2765Right-handed 310
Helix 33
33
B
2773 2777Right-handed 310
Helix 34
34
B
2778 2790Right-handed alpha
Helix 35
35
B
2848 2856Right-handed alpha
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There are 10 sheets in PDB entry 1JS8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2504 2506first strand
Strand 2
A
2767 2769parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2549 2550first strand
Strand 2
A
2556 2557anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2619 2620first strand
Strand 2
A
2625 2626anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2844 2847first strand
Strand 2
A
2794 2799anti-parallel
Strand 3
A
2886 2890anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2821 2829first strand
Strand 2
A
2808 2816anti-parallel
Strand 3
A
2863 2871anti-parallel
Strand 4
A
2876 2877anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2504 2506first strand
Strand 2
B
2767 2769parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2549 2550first strand
Strand 2
B
2556 2557anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2619 2620first strand
Strand 2
B
2625 2626anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2844 2847first strand
Strand 2
B
2794 2799anti-parallel
Strand 3
B
2886 2890anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2821 2829first strand
Strand 2
B
2808 2816anti-parallel
Strand 3
B
2863 2871anti-parallel
Strand 4
B
2876 2877anti-parallel
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