Analysis of interatomic Contacts of Structural Units in PDB entry:
1JS9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JS9 entry

There are 3 chains in PDB entry 1JS9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 41ARG 189
B
 ALA 25ARG 189
C
 MET 1ARG 189
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 1JS9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
74 78Right-handed 310
Helix 2
2
A
79 84Right-handed alpha
Helix 3
3
A
117 122Right-handed alpha
Helix 4
4
A
179 183Right-handed 310
Helix 5
5
B
74 78Right-handed 310
Helix 6
6
B
79 84Right-handed alpha
Helix 7
7
B
115 121Right-handed 310
Helix 8
8
C
79 84Right-handed alpha
Helix 9
9
C
115 121Right-handed 310
Helix 10
10
C
147 151Right-handed 310
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There are 7 sheets in PDB entry 1JS9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 52first strand
Strand 2
A
170 176anti-parallel
Strand 3
A
87 93anti-parallel
Strand 4
A
134 137anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 69first strand
Strand 2
A
154 157anti-parallel
Strand 3
A
105 108anti-parallel
Strand 4
A
126 127anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 137first strand
Strand 2
B
90 96anti-parallel
Strand 3
B
167 174anti-parallel
Strand 4
B
51 53anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 137first strand
Strand 2
B
90 96anti-parallel
Strand 3
B
167 174anti-parallel
Strand 4
B
56 57anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 70first strand
Strand 2
B
152 158anti-parallel
Strand 3
B
104 110anti-parallel
Strand 4
B
126 127anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
49 52first strand
Strand 2
C
170 176anti-parallel
Strand 3
C
87 93anti-parallel
Strand 4
C
134 137anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
66 68first strand
Strand 2
C
154 158anti-parallel
Strand 3
C
104 108anti-parallel
Strand 4
C
126 127anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il