Analysis of interatomic Contacts of Structural Units in PDB entry:
1JSW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JSW entry

There are 4 chains in PDB entry 1JSW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 459
B
 MET 1GLN 460
C
 ILE 5PRO 417
D
 MET 1VAL 459
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 64 helices in PDB entry 1JSW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
25 33Right-handed alpha
Helix 2
2
A
47 64Right-handed alpha
Helix 3
3
A
70 83Right-handed alpha
Helix 4
4
A
104 122Right-handed alpha
Helix 5
5
A
144 183Right-handed alpha
Helix 6
6
A
190 192Right-handed 310
Helix 7
7
A
200 224Right-handed alpha
Helix 8
8
A
245 256Right-handed alpha
Helix 9
9
A
275 302Right-handed alpha
Helix 10
10
A
331 355Right-handed alpha
Helix 11
11
A
365 389Right-handed alpha
Helix 12
12
A
391 393Right-handed 310
Helix 13
13
A
398 405Right-handed alpha
Helix 14
14
A
416 419Right-handed alpha
Helix 15
15
A
421 432Right-handed alpha
Helix 16
16
A
438 445Right-handed alpha
Helix 17
17
A
451 454Right-handed alpha
Helix 18
18
B
25 33Right-handed alpha
Helix 19
19
B
48 65Right-handed alpha
Helix 20
20
B
70 84Right-handed alpha
Helix 21
21
B
104 121Right-handed alpha
Helix 22
22
B
144 181Right-handed alpha
Helix 23
23
B
190 192Right-handed 310
Helix 24
24
B
200 224Right-handed alpha
Helix 25
25
B
245 257Right-handed alpha
Helix 26
26
B
276 301Right-handed alpha
Helix 27
27
B
322 324Right-handed 310
Helix 28
28
B
331 355Right-handed alpha
Helix 29
29
B
363 389Right-handed 310
Helix 30
30
B
398 405Right-handed alpha
Helix 31
31
B
410 419Right-handed 310
Helix 32
32
B
421 434Right-handed alpha
Helix 33
33
B
438 445Right-handed alpha
Helix 34
34
B
450 455Right-handed alpha
Helix 35
35
C
25 33Right-handed alpha
Helix 36
36
C
47 65Right-handed alpha
Helix 37
37
C
70 86Right-handed alpha
Helix 38
38
C
104 122Right-handed alpha
Helix 39
39
C
134 137Right-handed alpha
Helix 40
40
C
144 183Right-handed alpha
Helix 41
41
C
200 225Right-handed alpha
Helix 42
42
C
245 257Right-handed alpha
Helix 43
43
C
275 301Right-handed alpha
Helix 44
44
C
331 355Right-handed alpha
Helix 45
45
C
365 389Right-handed alpha
Helix 46
46
C
391 393Right-handed 310
Helix 47
47
C
399 406Right-handed alpha
Helix 48
48
C
411 413Right-handed 310
Helix 49
49
D
25 32Right-handed alpha
Helix 50
50
D
48 65Right-handed alpha
Helix 51
51
D
70 84Right-handed alpha
Helix 52
52
D
89 91Right-handed 310
Helix 53
53
D
101 122Right-handed 310
Helix 54
54
D
144 180Right-handed alpha
Helix 55
55
D
200 226Right-handed alpha
Helix 56
56
D
245 257Right-handed alpha
Helix 57
57
D
276 301Right-handed alpha
Helix 58
58
D
331 355Right-handed alpha
Helix 59
59
D
365 388Right-handed alpha
Helix 60
60
D
398 407Right-handed alpha
Helix 61
61
D
409 419Right-handed 310
Helix 62
62
D
421 434Right-handed alpha
Helix 63
63
D
438 444Right-handed alpha
Helix 64
64
D
450 455Right-handed alpha
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There are 6 sheets in PDB entry 1JSW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 9first strand
Strand 2
A
14 18anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 187first strand
Strand 2
A
197 199anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 10first strand
Strand 2
B
13 15anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
185 187first strand
Strand 2
B
197 199anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
6 9first strand
Strand 2
D
14 17anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
185 190first strand
Strand 2
D
193 199anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il