Analysis of interatomic Contacts of Structural Units in PDB entry:
1JTD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JTD entry

There are 2 chains in PDB entry 1JTD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 27TRP 288
B
 VAL 39GLY 311
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 1JTD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
27 41Right-handed alpha
Helix 2
2
A
71 86Right-handed alpha
Helix 3
3
A
98 102Right-handed 310
Helix 4
4
A
108 112Right-handed 310
Helix 5
5
A
119 130Right-handed alpha
Helix 6
6
A
131 142Right-handed alpha
Helix 7
7
A
144 154Right-handed alpha
Helix 8
8
A
167 171Right-handed 310
Helix 9
9
A
182 196Right-handed alpha
Helix 10
10
A
200 213Right-handed alpha
Helix 11
11
A
220 225Right-handed 310
Helix 12
12
A
269 287Right-handed alpha
Helix 13
13
B
59 63Right-handed 310
Helix 14
14
B
98 103Right-handed 310
Helix 15
15
B
137 142Right-handed 310
Helix 16
16
B
176 181Right-handed 310
Helix 17
17
B
215 219Right-handed 310
Helix 18
18
B
254 259Right-handed 310
Helix 19
19
B
289 293Right-handed 310
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There are 10 sheets in PDB entry 1JTD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 60first strand
Strand 2
A
43 50anti-parallel
Strand 3
A
257 264anti-parallel
Strand 4
A
243 250anti-parallel
Strand 5
A
230 237anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 67first strand
Strand 2
A
180 181anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 95first strand
Strand 2
A
117 118anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 47first strand
Strand 2
B
306 310anti-parallel
Strand 3
B
296 301anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 71first strand
Strand 2
B
75 80anti-parallel
Strand 3
B
83 88anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 110first strand
Strand 2
B
114 119anti-parallel
Strand 3
B
122 127anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
146 150first strand
Strand 2
B
153 158anti-parallel
Strand 3
B
161 166anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
183 188first strand
Strand 2
B
192 197anti-parallel
Strand 3
B
200 205anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
222 227first strand
Strand 2
B
231 236anti-parallel
Strand 3
B
239 244anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
263 266first strand
Strand 2
B
271 275anti-parallel
Strand 3
B
278 282anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il