Analysis of interatomic Contacts of Structural Units in PDB entry:
1JTP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JTP entry

There are 4 chains in PDB entry 1JTP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 1ARG 135
B
 ASP 1SER 133
L
 LYS 1LEU 129
M
 LYS 1LEU 129
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 1JTP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
62 65Right-handed 310
Helix 2
2
A
87 91Right-handed 310
Helix 3
3
A
109 115Right-handed alpha
Helix 4
4
B
87 91Right-handed 310
Helix 5
5
B
109 115Right-handed alpha
Helix 6
6
L
4 15Right-handed alpha
Helix 7
7
L
19 23Right-handed 310
Helix 8
8
L
24 37Right-handed alpha
Helix 9
9
L
79 85Right-handed 310
Helix 10
10
L
88 100Right-handed alpha
Helix 11
11
L
103 107Right-handed 310
Helix 12
12
L
108 115Right-handed alpha
Helix 13
13
L
119 125Right-handed 310
Helix 14
14
M
4 15Right-handed alpha
Helix 15
15
M
19 23Right-handed 310
Helix 16
16
M
24 37Right-handed alpha
Helix 17
17
M
79 85Right-handed 310
Helix 18
18
M
88 99Right-handed alpha
Helix 19
19
M
103 107Right-handed 310
Helix 20
20
M
108 115Right-handed alpha
Helix 21
21
M
119 124Right-handed 310
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There are 8 sheets in PDB entry 1JTP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 7first strand
Strand 2
A
18 25anti-parallel
Strand 3
A
78 83anti-parallel
Strand 4
A
68 72anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 60first strand
Strand 2
A
46 52anti-parallel
Strand 3
A
33 39anti-parallel
Strand 4
A
92 99anti-parallel
Strand 5
A
122 123anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 60first strand
Strand 2
A
46 52anti-parallel
Strand 3
A
33 39anti-parallel
Strand 4
A
92 99anti-parallel
Strand 5
A
127 132anti-parallel
Strand 6
A
10 13parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 8first strand
Strand 2
B
18 25anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
68 73anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 60first strand
Strand 2
B
46 52anti-parallel
Strand 3
B
33 39anti-parallel
Strand 4
B
92 99anti-parallel
Strand 5
B
122 123anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 60first strand
Strand 2
B
46 52anti-parallel
Strand 3
B
33 39anti-parallel
Strand 4
B
92 99anti-parallel
Strand 5
B
127 132anti-parallel
Strand 6
B
10 13parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
43 45first strand
Strand 2
L
51 53anti-parallel
Strand 3
L
58 59anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
43 45first strand
Strand 2
M
51 53anti-parallel
Strand 3
M
58 59anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il