Analysis of interatomic Contacts of Structural Units in PDB entry:
1JTZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JTZ entry

There are 3 chains in PDB entry 1JTZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
X
 GLN 162ASP 316
Y
 GLN 162ASP 316
Z
 GLN 162ASP 316
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 1JTZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
X
226 228Right-handed 310
Helix 2
2
X
294 298Right-handed 310
Helix 3
3
Y
226 228Right-handed 310
Helix 4
4
Y
294 298Right-handed 310
Helix 5
5
Z
226 228Right-handed 310
Helix 6
6
Z
294 298Right-handed 310
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There are 11 sheets in PDB entry 1JTZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
269 282first strand
Strand 2
X
211 224anti-parallel
Strand 3
X
306 313anti-parallel
Strand 4
X
164 169anti-parallel
Strand 5
X
186 187first strand
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
269 282first strand
Strand 2
X
211 224anti-parallel
Strand 3
X
306 313anti-parallel
Strand 4
X
164 169anti-parallel
Strand 5
X
194 196first strand
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
251 262first strand
Strand 2
X
234 245anti-parallel
Strand 3
X
286 292anti-parallel
Strand 4
X
181 183first strand
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
251 262first strand
Strand 2
X
234 245anti-parallel
Strand 3
X
286 292anti-parallel
Strand 4
X
205 206first strand
Strand 5
X
199 200anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
194 196first strand
Strand 2
Y
164 168anti-parallel
Strand 3
Y
306 314anti-parallel
Strand 4
Y
211 224anti-parallel
Strand 5
Y
269 282anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
251 262first strand
Strand 2
Y
234 244anti-parallel
Strand 3
Y
287 292anti-parallel
Strand 4
Y
181 183first strand
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
251 262first strand
Strand 2
Y
234 244anti-parallel
Strand 3
Y
287 292anti-parallel
Strand 4
Y
204 206first strand
Strand 5
Y
199 200anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
269 282first strand
Strand 2
Z
211 224anti-parallel
Strand 3
Z
306 313anti-parallel
Strand 4
Z
164 169anti-parallel
Strand 5
Z
186 187first strand
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
269 282first strand
Strand 2
Z
211 224anti-parallel
Strand 3
Z
306 313anti-parallel
Strand 4
Z
164 169anti-parallel
Strand 5
Z
194 196first strand
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
251 262first strand
Strand 2
Z
234 244anti-parallel
Strand 3
Z
287 292anti-parallel
Strand 4
Z
181 183first strand
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
251 262first strand
Strand 2
Z
234 244anti-parallel
Strand 3
Z
287 292anti-parallel
Strand 4
Z
205 206first strand
Strand 5
Z
199 200anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il