Analysis of interatomic Contacts of Structural Units in PDB entry:
1JUW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JUW entry

There are 3 chains in PDB entry 1JUW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 1VAL 555
B
 A 1 T 22
C
 A 101 T 122
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 1JUW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
34 47Right-handed alpha
Helix 2
2
A
50 54Right-handed 310
Helix 3
3
A
55 66Right-handed alpha
Helix 4
4
A
70 75Right-handed alpha
Helix 5
5
A
79 81Right-handed 310
Helix 6
6
A
85 101Right-handed alpha
Helix 7
7
A
103 118Right-handed alpha
Helix 8
8
A
161 164Right-handed 310
Helix 9
9
A
216 248Right-handed alpha
Helix 10
10
A
252 269Right-handed alpha
Helix 11
11
A
290 292Right-handed 310
Helix 12
12
A
321 332Right-handed alpha
Helix 13
13
A
346 358Right-handed alpha
Helix 14
14
A
362 380Right-handed alpha
Helix 15
15
A
389 406Right-handed alpha
Helix 16
16
A
429 461Right-handed alpha
Helix 17
17
A
464 495Right-handed alpha
Helix 18
18
A
512 519Right-handed alpha
Helix 19
19
A
526 531Right-handed 310
Helix 20
20
A
542 549Right-handed alpha
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There are 5 sheets in PDB entry 1JUW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 7first strand
Strand 2
A
123 126anti-parallel
Strand 3
A
129 132anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 31first strand
Strand 2
A
24 26anti-parallel
Strand 3
A
83 84anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 143first strand
Strand 2
A
156 157anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 188first strand
Strand 2
A
166 168parallel
Strand 3
A
197 200anti-parallel
Strand 4
A
207 210anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 295first strand
Strand 2
A
302 306anti-parallel
Strand 3
A
314 318anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il