Analysis of interatomic Contacts of Structural Units in PDB entry:
1JVK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JVK entry

There are 2 chains in PDB entry 1JVK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2CYS 216
B
 THR 2ALA 215
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 1JVK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
81 85Right-handed 310
Helix 2
2
A
126 132Right-handed alpha
Helix 3
3
A
186 192Right-handed alpha
Helix 4
4
B
81 85Right-handed 310
Helix 5
5
B
126 132Right-handed alpha
Helix 6
6
B
186 193Right-handed alpha
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There are 12 sheets in PDB entry 1JVK. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 50first strand
Strand 2
A
35 40anti-parallel
Strand 3
A
86 92anti-parallel
Strand 4
A
101 102anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 50first strand
Strand 2
A
35 40anti-parallel
Strand 3
A
86 92anti-parallel
Strand 4
A
106 110anti-parallel
Strand 5
A
9 12parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 23first strand
Strand 2
A
72 78anti-parallel
Strand 3
A
64 69anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 123first strand
Strand 2
A
135 144anti-parallel
Strand 3
A
177 185anti-parallel
Strand 4
A
164 166anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 123first strand
Strand 2
A
135 144anti-parallel
Strand 3
A
177 185anti-parallel
Strand 4
A
170 171anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 159first strand
Strand 2
A
150 155anti-parallel
Strand 3
A
196 202anti-parallel
Strand 4
A
205 211anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 50first strand
Strand 2
B
35 40anti-parallel
Strand 3
B
86 94anti-parallel
Strand 4
B
99 102anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 50first strand
Strand 2
B
35 40anti-parallel
Strand 3
B
86 94anti-parallel
Strand 4
B
106 110anti-parallel
Strand 5
B
9 12parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 23first strand
Strand 2
B
72 77anti-parallel
Strand 3
B
64 69anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 123first strand
Strand 2
B
135 144anti-parallel
Strand 3
B
177 185anti-parallel
Strand 4
B
164 166anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 123first strand
Strand 2
B
135 144anti-parallel
Strand 3
B
177 185anti-parallel
Strand 4
B
170 171anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
159 160first strand
Strand 2
B
150 154anti-parallel
Strand 3
B
196 202anti-parallel
Strand 4
B
205 211anti-parallel
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