Analysis of interatomic Contacts of Structural Units in PDB entry:
1JVN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JVN entry

There are 4 chains in PDB entry 1JVN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -3ILE 82
A
 VAL 84GLU 552
B
 GLY -3ILE 82
B
 VAL 84GLU 552
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 1JVN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 24Right-handed alpha
Helix 2
2
A
33 37Right-handed 310
Helix 3
3
A
52 63Right-handed alpha
Helix 4
4
A
65 75Right-handed alpha
Helix 5
5
A
86 88Right-handed 310
Helix 6
6
A
154 164Right-handed alpha
Helix 7
7
A
194 196Right-handed 310
Helix 8
8
A
197 210Right-handed alpha
Helix 9
9
A
220 228Right-handed alpha
Helix 10
10
A
231 236Right-handed 310
Helix 11
11
A
276 289Right-handed alpha
Helix 12
12
A
306 309Right-handed 310
Helix 13
13
A
310 320Right-handed alpha
Helix 14
14
A
345 357Right-handed alpha
Helix 15
15
A
364 377Right-handed alpha
Helix 16
16
A
385 395Right-handed alpha
Helix 17
17
A
412 416Right-handed 310
Helix 18
18
A
451 461Right-handed alpha
Helix 19
19
A
470 474Right-handed 310
Helix 20
20
A
481 492Right-handed alpha
Helix 21
21
A
504 515Right-handed alpha
Helix 22
22
A
523 528Right-handed alpha
Helix 23
23
A
532 543Right-handed alpha
Helix 24
24
B
14 24Right-handed alpha
Helix 25
25
B
33 37Right-handed 310
Helix 26
26
B
52 63Right-handed alpha
Helix 27
27
B
65 75Right-handed alpha
Helix 28
28
B
86 88Right-handed 310
Helix 29
29
B
154 164Right-handed alpha
Helix 30
30
B
193 196Right-handed 310
Helix 31
31
B
197 210Right-handed alpha
Helix 32
32
B
220 228Right-handed alpha
Helix 33
33
B
231 236Right-handed 310
Helix 34
34
B
276 289Right-handed alpha
Helix 35
35
B
306 309Right-handed 310
Helix 36
36
B
310 320Right-handed alpha
Helix 37
37
B
345 356Right-handed alpha
Helix 38
38
B
364 377Right-handed alpha
Helix 39
39
B
385 395Right-handed alpha
Helix 40
40
B
412 416Right-handed 310
Helix 41
41
B
451 462Right-handed alpha
Helix 42
42
B
470 474Right-handed 310
Helix 43
43
B
481 492Right-handed alpha
Helix 44
44
B
504 515Right-handed alpha
Helix 45
45
B
523 528Right-handed alpha
Helix 46
46
B
532 542Right-handed alpha
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There are 3 sheets in PDB entry 1JVN. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 31first strand
Strand 2
A
3 7parallel
Strand 3
A
45 48parallel
Strand 4
A
79 82parallel
Strand 5
A
187 190parallel
Strand 6
A
176 184anti-parallel
Strand 7
A
167 173anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 93first strand
Strand 2
A
105 111parallel
Strand 3
A
149 150anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 125first strand
Strand 2
A
143 147anti-parallel
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