Analysis of interatomic Contacts of Structural Units in PDB entry:
1JVO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1JVO entry

There are 12 chains in PDB entry 1JVO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 1	LYS 128
B	ALA 1	LYS 128
C	ALA 1	LYS 128
D	ALA 1	LYS 128
E	ALA 1	LYS 128
F	ALA 1	LYS 128
G	ALA 1	LYS 128
H	ALA 1	LYS 128
I	ALA 1	LYS 128
J	ALA 1	LYS 128
K	ALA 1	LYS 128
L	ALA 1	LYS 128

There are 59 helices in PDB entry 1JVO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	40	45	Right-handed alpha
Helix 2	2	A	55	67	Right-handed alpha
Helix 3	3	A	68	71	Right-handed 310
Helix 4	4	A	100	102	Right-handed 310
Helix 5	5	A	116	120	Right-handed 310
Helix 6	6	B	40	45	Right-handed alpha
Helix 7	7	B	55	67	Right-handed alpha
Helix 8	8	B	68	71	Right-handed 310
Helix 9	9	B	100	102	Right-handed 310
Helix 10	10	B	116	120	Right-handed 310
Helix 11	11	C	40	45	Right-handed alpha
Helix 12	12	C	55	67	Right-handed alpha
Helix 13	13	C	68	71	Right-handed 310
Helix 14	14	C	100	102	Right-handed 310
Helix 15	15	C	116	120	Right-handed 310
Helix 16	16	D	40	45	Right-handed alpha
Helix 17	17	D	55	67	Right-handed alpha
Helix 18	18	D	68	71	Right-handed 310
Helix 19	19	D	100	102	Right-handed 310
Helix 20	20	D	116	120	Right-handed 310
Helix 21	21	E	40	45	Right-handed alpha
Helix 22	22	E	55	67	Right-handed alpha
Helix 23	23	E	68	71	Right-handed 310
Helix 24	24	E	100	102	Right-handed 310
Helix 25	25	E	116	120	Right-handed 310
Helix 26	26	F	40	45	Right-handed alpha
Helix 27	27	F	55	67	Right-handed alpha
Helix 28	28	F	68	71	Right-handed 310
Helix 29	29	F	100	102	Right-handed 310
Helix 30	30	G	40	45	Right-handed alpha
Helix 31	31	G	55	67	Right-handed alpha
Helix 32	32	G	68	71	Right-handed 310
Helix 33	33	G	100	102	Right-handed 310
Helix 34	34	G	116	120	Right-handed 310
Helix 35	35	H	40	45	Right-handed alpha
Helix 36	36	H	55	67	Right-handed alpha
Helix 37	37	H	68	71	Right-handed 310
Helix 38	38	H	100	102	Right-handed 310
Helix 39	39	H	116	120	Right-handed 310
Helix 40	40	I	40	45	Right-handed alpha
Helix 41	41	I	55	67	Right-handed alpha
Helix 42	42	I	68	71	Right-handed 310
Helix 43	43	I	100	102	Right-handed 310
Helix 44	44	I	116	120	Right-handed 310
Helix 45	45	J	40	45	Right-handed alpha
Helix 46	46	J	55	67	Right-handed alpha
Helix 47	47	J	68	71	Right-handed 310
Helix 48	48	J	100	102	Right-handed 310
Helix 49	49	J	116	120	Right-handed 310
Helix 50	50	K	40	45	Right-handed alpha
Helix 51	51	K	55	67	Right-handed alpha
Helix 52	52	K	68	71	Right-handed 310
Helix 53	53	K	100	102	Right-handed 310
Helix 54	54	K	116	120	Right-handed 310
Helix 55	55	L	40	45	Right-handed alpha
Helix 56	56	L	55	67	Right-handed alpha
Helix 57	57	L	68	71	Right-handed 310
Helix 58	58	L	100	102	Right-handed 310
Helix 59	59	L	116	120	Right-handed 310

There are 24 sheets in PDB entry 1JVO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	8	first strand
Strand 2	A	28	34	parallel
Strand 3	A	92	98	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	23	first strand
Strand 2	A	122	128	parallel
Strand 3	A	108	111	anti-parallel
Strand 4	A	49	52	anti-parallel
Strand 5	A	82	83	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	8	first strand
Strand 2	B	28	34	parallel
Strand 3	B	92	98	anti-parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	19	23	first strand
Strand 2	B	122	128	parallel
Strand 3	B	108	111	anti-parallel
Strand 4	B	49	52	anti-parallel
Strand 5	B	82	83	anti-parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	8	first strand
Strand 2	C	28	34	parallel
Strand 3	C	92	98	anti-parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	19	23	first strand
Strand 2	C	122	128	parallel
Strand 3	C	108	111	anti-parallel
Strand 4	C	49	52	anti-parallel
Strand 5	C	82	83	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	8	first strand
Strand 2	D	28	34	parallel
Strand 3	D	92	98	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	19	23	first strand
Strand 2	D	122	128	parallel
Strand 3	D	108	111	anti-parallel
Strand 4	D	49	52	anti-parallel
Strand 5	D	82	83	anti-parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	8	first strand
Strand 2	E	28	34	parallel
Strand 3	E	92	98	anti-parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	19	23	first strand
Strand 2	E	122	128	parallel
Strand 3	E	108	111	anti-parallel
Strand 4	E	49	52	anti-parallel
Strand 5	E	82	83	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	8	first strand
Strand 2	F	28	34	parallel
Strand 3	F	92	98	anti-parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	19	23	first strand
Strand 2	F	122	128	parallel
Strand 3	F	108	111	anti-parallel
Strand 4	F	49	52	anti-parallel
Strand 5	F	82	83	anti-parallel

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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	8	first strand
Strand 2	G	28	34	parallel
Strand 3	G	92	98	anti-parallel

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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	19	23	first strand
Strand 2	G	122	128	parallel
Strand 3	G	108	111	anti-parallel
Strand 4	G	49	52	anti-parallel
Strand 5	G	82	83	anti-parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	8	first strand
Strand 2	H	28	34	parallel
Strand 3	H	92	98	anti-parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	19	23	first strand
Strand 2	H	122	128	parallel
Strand 3	H	108	111	anti-parallel
Strand 4	H	49	52	anti-parallel
Strand 5	H	82	83	anti-parallel

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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	4	8	first strand
Strand 2	I	28	34	parallel
Strand 3	I	92	98	anti-parallel

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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	19	23	first strand
Strand 2	I	122	128	parallel
Strand 3	I	108	111	anti-parallel
Strand 4	I	49	52	anti-parallel
Strand 5	I	82	83	anti-parallel

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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	4	8	first strand
Strand 2	J	28	34	parallel
Strand 3	J	92	98	anti-parallel

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There are 5 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	19	23	first strand
Strand 2	J	122	128	parallel
Strand 3	J	108	111	anti-parallel
Strand 4	J	49	52	anti-parallel
Strand 5	J	82	83	anti-parallel

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There are 3 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	4	8	first strand
Strand 2	K	28	34	parallel
Strand 3	K	92	98	anti-parallel

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There are 5 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	19	23	first strand
Strand 2	K	122	128	parallel
Strand 3	K	108	111	anti-parallel
Strand 4	K	49	52	anti-parallel
Strand 5	K	82	83	anti-parallel

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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	8	first strand
Strand 2	L	28	34	parallel
Strand 3	L	92	98	anti-parallel

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There are 5 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	19	23	first strand
Strand 2	L	122	128	parallel
Strand 3	L	108	111	anti-parallel
Strand 4	L	49	52	anti-parallel
Strand 5	L	82	83	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1JVO

Analysis of interatomic Contacts of Structural Units in PDB entry:
1JVO