Analysis of interatomic Contacts of Structural Units in PDB entry:
1JVX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JVX entry

There is 1 chain in PDB entry 1JVX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 1LYS 371
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 19 helices in PDB entry 1JVX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 32Right-handed alpha
Helix 2
2
A
42 53Right-handed alpha
Helix 3
3
A
66 73Right-handed alpha
Helix 4
4
A
84 89Right-handed alpha
Helix 5
5
A
90 97Right-handed alpha
Helix 6
6
A
128 130Right-handed 310
Helix 7
7
A
131 141Right-handed alpha
Helix 8
8
A
153 156Right-handed 310
Helix 9
9
A
157 164Right-handed alpha
Helix 10
10
A
185 201Right-handed alpha
Helix 11
11
A
209 219Right-handed alpha
Helix 12
12
A
228 230Right-handed 310
Helix 13
13
A
231 238Right-handed alpha
Helix 14
14
A
272 283Right-handed alpha
Helix 15
15
A
286 295Right-handed alpha
Helix 16
16
A
305 313Right-handed alpha
Helix 17
17
A
315 328Right-handed alpha
Helix 18
18
A
336 354Right-handed alpha
Helix 19
19
A
357 371Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 1JVX. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 111first strand
Strand 2
A
258 266anti-parallel
Strand 3
A
59 63anti-parallel
Strand 4
A
7 10parallel
Strand 5
A
35 38parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 111first strand
Strand 2
A
258 266anti-parallel
Strand 3
A
329 330parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 99first strand
Strand 2
A
102 103anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 227first strand
Strand 2
A
114 118anti-parallel
Strand 3
A
242 245anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 171first strand
Strand 2
A
176 182anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il