Analysis of interatomic Contacts of Structural Units in PDB entry:
1JW9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JW9 entry

There are 2 chains in PDB entry 1JW9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ALA 2GLY 248
D
 MET 1GLY 81
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 1JW9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
5 12Right-handed alpha
Helix 2
2
B
12 17Right-handed alpha
Helix 3
3
B
21 32Right-handed alpha
Helix 4
4
B
40 54Right-handed alpha
Helix 5
5
B
67 73Right-handed 310
Helix 6
6
B
78 82Right-handed 310
Helix 7
7
B
85 98Right-handed alpha
Helix 8
8
B
111 121Right-handed alpha
Helix 9
9
B
131 146Right-handed alpha
Helix 10
10
B
172 178Right-handed alpha
Helix 11
11
B
193 214Right-handed alpha
Helix 12
12
D
7 15Right-handed alpha
Helix 13
13
D
27 37Right-handed alpha
Helix 14
14
D
39 46Right-handed alpha
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There are 2 sheets in PDB entry 1JW9. Click on sheet of interest to get list of strands forming it: A, B,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 106first strand
Strand 2
B
57 61parallel
Strand 3
B
33 37parallel
Strand 4
B
124 127parallel
Strand 5
B
149 155parallel
Strand 6
B
158 164anti-parallel
Strand 7
B
222 227anti-parallel
Strand 8
B
232 237anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
18 21first strand
Strand 2
D
2 6anti-parallel
Strand 3
D
71 75parallel
Strand 4
D
52 55anti-parallel
Strand 5
D
58 59anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il