Analysis of interatomic Contacts of Structural Units in PDB entry:
1JWM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JWM entry

There are 4 chains in PDB entry 1JWM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 3ALA 182
B
 GLY 1ALA 190
C
 PRO 306THR 318
D
 GLU 1GLY 239
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 1JWM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
45 51Right-handed 310
Helix 2
2
A
58 77Right-handed alpha
Helix 3
3
B
51 53Right-handed 310
Helix 4
4
B
54 63Right-handed alpha
Helix 5
5
B
64 73Right-handed alpha
Helix 6
6
B
73 78Right-handed alpha
Helix 7
7
B
78 86Right-handed alpha
Helix 8
8
D
7 11Right-handed 310
Helix 9
9
D
13 17Right-handed 310
Helix 10
10
D
21 26Right-handed alpha
Helix 11
11
D
70 78Right-handed alpha
Helix 12
12
D
156 172Right-handed alpha
Helix 13
13
D
209 215Right-handed alpha
Helix 14
14
D
216 220Right-handed 310
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There are 12 sheets in PDB entry 1JWM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 43first strand
Strand 2
A
29 34anti-parallel
Strand 3
A
19 26anti-parallel
Strand 4
A
5 15anti-parallel
Strand 5
B
7 18anti-parallel
Strand 6
B
23 31anti-parallel
Strand 7
B
36 41anti-parallel
Strand 8
B
47 49anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 54first strand
Strand 2
C
307 308parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 93first strand
Strand 2
A
103 112anti-parallel
Strand 3
A
145 153anti-parallel
Strand 4
A
133 134anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 93first strand
Strand 2
A
103 112anti-parallel
Strand 3
A
145 153anti-parallel
Strand 4
A
138 139anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 128first strand
Strand 2
A
118 123anti-parallel
Strand 3
A
160 166anti-parallel
Strand 4
A
174 179anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 103first strand
Strand 2
B
113 122anti-parallel
Strand 3
B
155 163anti-parallel
Strand 4
B
142 144anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 103first strand
Strand 2
B
113 122anti-parallel
Strand 3
B
155 163anti-parallel
Strand 4
B
148 149anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 133first strand
Strand 2
B
171 176anti-parallel
Strand 3
B
184 186anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
33 38first strand
Strand 2
D
82 86anti-parallel
Strand 3
D
115 117anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
48 51first strand
Strand 2
D
63 67anti-parallel
Strand 3
D
108 112parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
140 149first strand
Strand 2
D
129 137anti-parallel
Strand 3
D
229 235parallel
Strand 4
D
183 189anti-parallel
Strand 5
D
195 199anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
153 155first strand
Strand 2
D
222 224anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il