Analysis of interatomic Contacts of Structural Units in PDB entry:
1JWT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JWT entry

There is 1 chain in PDB entry 1JWT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 1LEU 299
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 1JWT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 32Right-handed alpha
Helix 2
2
A
77 80Right-handed 310
Helix 3
3
A
84 87Right-handed 310
Helix 4
4
A
158 166Right-handed alpha
Helix 5
5
A
199 205Right-handed alpha
Helix 6
6
A
272 286Right-handed alpha
Helix 7
7
A
295 299Right-handed 310
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There are 4 sheets in PDB entry 1JWT. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 56first strand
Strand 2
A
62 70anti-parallel
Strand 3
A
73 76anti-parallel
Strand 4
A
137 141anti-parallel
Strand 5
A
113 120anti-parallel
Strand 6
A
95 99anti-parallel
Strand 7
A
51 56anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 83first strand
Strand 2
A
88 89anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 176first strand
Strand 2
A
191 196anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 218first strand
Strand 2
A
268 271anti-parallel
Strand 3
A
249 258anti-parallel
Strand 4
A
238 242anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il