Analysis of interatomic Contacts of Structural Units in PDB entry:
1JX7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JX7 entry

There are 6 chains in PDB entry 1JX7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1PHE 117
B
 MSE 201PHE 317
C
 MSE 401PHE 517
D
 MSE 601PHE 717
E
 MSE 801PHE 917
F
 MSE 1001PHE 1117
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 1JX7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 32Right-handed alpha
Helix 2
2
A
43 50Right-handed 310
Helix 3
3
A
60 71Right-handed alpha
Helix 4
4
A
79 85Right-handed alpha
Helix 5
5
A
100 108Right-handed alpha
Helix 6
6
B
215 232Right-handed alpha
Helix 7
7
B
243 250Right-handed 310
Helix 8
8
B
260 269Right-handed alpha
Helix 9
9
B
279 285Right-handed alpha
Helix 10
10
B
300 311Right-handed alpha
Helix 11
11
C
416 432Right-handed alpha
Helix 12
12
C
443 450Right-handed 310
Helix 13
13
C
460 471Right-handed alpha
Helix 14
14
C
479 485Right-handed alpha
Helix 15
15
C
500 510Right-handed alpha
Helix 16
16
D
615 632Right-handed alpha
Helix 17
17
D
643 650Right-handed 310
Helix 18
18
D
660 670Right-handed alpha
Helix 19
19
D
679 685Right-handed alpha
Helix 20
20
D
700 711Right-handed alpha
Helix 21
21
E
815 830Right-handed alpha
Helix 22
22
E
843 850Right-handed 310
Helix 23
23
E
860 869Right-handed alpha
Helix 24
24
E
879 885Right-handed alpha
Helix 25
25
E
900 910Right-handed alpha
Helix 26
26
F
1015 1032Right-handed alpha
Helix 27
27
F
1043 1050Right-handed 310
Helix 28
28
F
1060 1070Right-handed alpha
Helix 29
29
F
1079 1086Right-handed alpha
Helix 30
30
F
1100 1111Right-handed alpha
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There are 6 sheets in PDB entry 1JX7. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 99first strand
Strand 2
A
75 78parallel
Strand 3
A
36 41parallel
Strand 4
A
3 8parallel
Strand 5
A
113 116parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
296 299first strand
Strand 2
B
275 278parallel
Strand 3
B
236 241parallel
Strand 4
B
203 208parallel
Strand 5
B
313 317parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
496 499first strand
Strand 2
C
475 478parallel
Strand 3
C
436 441parallel
Strand 4
C
403 408parallel
Strand 5
C
513 516parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
696 699first strand
Strand 2
D
675 678parallel
Strand 3
D
636 641parallel
Strand 4
D
603 608parallel
Strand 5
D
713 716parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
896 899first strand
Strand 2
E
875 878parallel
Strand 3
E
836 841parallel
Strand 4
E
803 808parallel
Strand 5
E
913 917parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
1096 1099first strand
Strand 2
F
1075 1078parallel
Strand 3
F
1036 1041parallel
Strand 4
F
1003 1008parallel
Strand 5
F
1113 1117parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il