Analysis of interatomic Contacts of Structural Units in PDB entry:
1JX8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JX8 entry

There are 2 chains in PDB entry 1JX8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 1ARG 250
B
 GLU 1TRP 89
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 1JX8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1 9Right-handed alpha
Helix 2
2
A
20 25Right-handed alpha
Helix 3
3
A
85 89Right-handed 310
Helix 4
4
A
90 98Right-handed alpha
Helix 5
5
A
120 124Right-handed alpha
Helix 6
6
B
3 15Right-handed alpha
Helix 7
7
B
33 41Right-handed alpha
Helix 8
8
B
46 57Right-handed alpha
Helix 9
9
B
69 87Right-handed alpha
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There are 4 sheets in PDB entry 1JX8. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 34first strand
Strand 2
A
44 50anti-parallel
Strand 3
A
125 131anti-parallel
Strand 4
A
82 83anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 39first strand
Strand 2
A
235 245parallel
Strand 3
A
145 154anti-parallel
Strand 4
A
70 76anti-parallel
Strand 5
A
109 119anti-parallel
Strand 6
A
103 106anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 60first strand
Strand 2
A
66 67anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 207first strand
Strand 2
A
190 196anti-parallel
Strand 3
A
177 184anti-parallel
Strand 4
A
220 221anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il