Analysis of interatomic Contacts of Structural Units in PDB entry:
1JXA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JXA entry

There are 3 chains in PDB entry 1JXA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 1GLU 608
B
 CYS 1GLU 608
C
 CYS 1GLU 608
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 70 helices in PDB entry 1JXA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 22Right-handed alpha
Helix 2
2
A
50 60Right-handed alpha
Helix 3
3
A
105 114Right-handed alpha
Helix 4
4
A
123 137Right-handed alpha
Helix 5
5
A
140 149Right-handed alpha
Helix 6
6
A
150 152Right-handed 310
Helix 7
7
A
250 267Right-handed alpha
Helix 8
8
A
278 282Right-handed 310
Helix 9
9
A
288 292Right-handed 310
Helix 10
10
A
300 317Right-handed alpha
Helix 11
11
A
326 331Right-handed alpha
Helix 12
12
A
352 365Right-handed alpha
Helix 13
13
A
379 385Right-handed alpha
Helix 14
14
A
402 423Right-handed alpha
Helix 15
15
A
426 438Right-handed alpha
Helix 16
16
A
440 449Right-handed alpha
Helix 17
17
A
450 460Right-handed alpha
Helix 18
18
A
475 491Right-handed alpha
Helix 19
19
A
500 509Right-handed 310
Helix 20
20
A
525 538Right-handed alpha
Helix 21
21
A
571 592Right-handed alpha
Helix 22
22
B
12 22Right-handed alpha
Helix 23
23
B
23 27Right-handed 310
Helix 24
24
B
50 61Right-handed alpha
Helix 25
25
B
80 85Right-handed alpha
Helix 26
26
B
105 115Right-handed alpha
Helix 27
27
B
124 136Right-handed alpha
Helix 28
28
B
140 149Right-handed alpha
Helix 29
29
B
150 152Right-handed 310
Helix 30
30
B
192 196Right-handed 310
Helix 31
31
B
250 258Right-handed alpha
Helix 32
32
B
258 268Right-handed alpha
Helix 33
33
B
278 282Right-handed 310
Helix 34
34
B
283 290Right-handed alpha
Helix 35
35
B
300 315Right-handed alpha
Helix 36
36
B
327 332Right-handed alpha
Helix 37
37
B
352 364Right-handed alpha
Helix 38
38
B
379 384Right-handed alpha
Helix 39
39
B
404 414Right-handed alpha
Helix 40
40
B
415 423Right-handed alpha
Helix 41
41
B
428 433Right-handed 310
Helix 42
42
B
439 449Right-handed alpha
Helix 43
43
B
450 459Right-handed alpha
Helix 44
44
B
460 463Right-handed 310
Helix 45
45
B
475 491Right-handed alpha
Helix 46
46
B
498 510Right-handed 310
Helix 47
47
B
525 539Right-handed alpha
Helix 48
48
B
568 570Right-handed 310
Helix 49
49
B
571 592Right-handed alpha
Helix 50
50
C
12 18Right-handed alpha
Helix 51
51
C
20 24Right-handed 310
Helix 52
52
C
52 54Right-handed 310
Helix 53
53
C
55 60Right-handed alpha
Helix 54
54
C
80 85Right-handed alpha
Helix 55
55
C
103 111Right-handed alpha
Helix 56
56
C
124 136Right-handed alpha
Helix 57
57
C
141 145Right-handed 310
Helix 58
58
C
250 258Right-handed alpha
Helix 59
59
C
259 265Right-handed alpha
Helix 60
60
C
300 317Right-handed alpha
Helix 61
61
C
352 366Right-handed alpha
Helix 62
62
C
379 385Right-handed alpha
Helix 63
63
C
402 424Right-handed alpha
Helix 64
64
C
427 438Right-handed alpha
Helix 65
65
C
439 450Right-handed alpha
Helix 66
66
C
472 474Right-handed 310
Helix 67
67
C
475 485Right-handed alpha
Helix 68
68
C
500 505Right-handed 310
Helix 69
69
C
525 539Right-handed alpha
Helix 70
70
C
571 591Right-handed alpha
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There are 18 sheets in PDB entry 1JXA. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 44first strand
Strand 2
A
34 36anti-parallel
Strand 3
A
67 69anti-parallel
Strand 4
A
4 7anti-parallel
Strand 5
A
187 190anti-parallel
Strand 6
A
179 182anti-parallel
Strand 7
A
202 205anti-parallel
Strand 8
A
234 235anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 31first strand
Strand 2
A
47 48anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 90first strand
Strand 2
A
93 95anti-parallel
Strand 3
A
159 162anti-parallel
Strand 4
A
169 171anti-parallel
Strand 5
A
213 215anti-parallel
Strand 6
A
218 222anti-parallel
Strand 7
A
228 229anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 101first strand
Strand 2
A
154 155anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 323first strand
Strand 2
A
294 298parallel
Strand 3
A
341 345parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
373 374first strand
Strand 2
A
389 390parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
493 498first strand
Strand 2
A
466 471parallel
Strand 3
A
515 520parallel
Strand 4
A
542 547parallel
Strand 5
A
559 561parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 45first strand
Strand 2
B
33 35anti-parallel
Strand 3
B
68 70anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 90first strand
Strand 2
B
93 99anti-parallel
Strand 3
B
156 162anti-parallel
Strand 4
B
171 173anti-parallel
Strand 5
B
210 212anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
179 181first strand
Strand 2
B
188 190anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
322 326first strand
Strand 2
B
294 299parallel
Strand 3
B
341 345parallel
Strand 4
B
369 370parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
496 497first strand
Strand 2
B
468 470parallel
Strand 3
B
516 520parallel
Strand 4
B
543 548parallel
Strand 5
B
559 564parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 7first strand
Strand 2
C
187 190anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
31 32first strand
Strand 2
C
71 72anti-parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
156 158first strand
Strand 2
C
170 174anti-parallel
Strand 3
C
210 214anti-parallel
Strand 4
C
219 222anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
179 180first strand
Strand 2
C
204 205anti-parallel
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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
322 326first strand
Strand 2
C
294 299parallel
Strand 3
C
341 344parallel
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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
493 498first strand
Strand 2
C
466 471parallel
Strand 3
C
516 520parallel
Strand 4
C
543 547parallel
Strand 5
C
559 561parallel
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