Analysis of interatomic Contacts of Structural Units in PDB entry:
1JXP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JXP entry

There are 4 chains in PDB entry 1JXP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 3MET 179
C
 GLY 221SER 232
B
 ILE 3MET 179
D
 GLY 221SER 232
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 1JXP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 21Right-handed alpha
Helix 2
2
A
56 59Right-handed alpha
Helix 3
3
A
132 135Right-handed 310
Helix 4
4
A
172 176Right-handed alpha
Helix 5
5
B
13 21Right-handed alpha
Helix 6
6
B
56 59Right-handed alpha
Helix 7
7
B
78 80Right-handed 310
Helix 8
8
B
172 177Right-handed alpha
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There are 5 sheets in PDB entry 1JXP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 37first strand
Strand 2
A
42 48anti-parallel
Strand 3
A
51 55anti-parallel
Strand 4
A
82 86anti-parallel
Strand 5
A
73 77anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 66first strand
Strand 2
A
69 71anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 117first strand
Strand 2
A
103 107anti-parallel
Strand 3
A
142 145anti-parallel
Strand 4
A
149 158anti-parallel
Strand 5
A
166 171anti-parallel
Strand 6
A
123 126anti-parallel
Strand 7
A
116 118anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 37first strand
Strand 2
B
42 48anti-parallel
Strand 3
B
51 55anti-parallel
Strand 4
B
82 86anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
103 107first strand
Strand 2
B
113 118anti-parallel
Strand 3
B
123 126anti-parallel
Strand 4
B
166 171anti-parallel
Strand 5
B
150 158anti-parallel
Strand 6
B
142 144anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il