Analysis of interatomic Contacts of Structural Units in PDB entry:
1JY5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JY5 entry

There are 2 chains in PDB entry 1JY5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 2ASN 208
B
 HIS 2ASN 208
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 1JY5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 19Right-handed alpha
Helix 2
2
A
29 33Right-handed 310
Helix 3
3
A
64 70Right-handed 310
Helix 4
4
A
71 79Right-handed alpha
Helix 5
5
A
96 105Right-handed alpha
Helix 6
6
A
106 110Right-handed 310
Helix 7
7
A
115 130Right-handed alpha
Helix 8
8
A
131 138Right-handed alpha
Helix 9
9
A
151 163Right-handed alpha
Helix 10
10
B
15 19Right-handed alpha
Helix 11
11
B
29 33Right-handed 310
Helix 12
12
B
64 70Right-handed 310
Helix 13
13
B
71 79Right-handed alpha
Helix 14
14
B
96 105Right-handed alpha
Helix 15
15
B
106 110Right-handed 310
Helix 16
16
B
115 130Right-handed alpha
Helix 17
17
B
131 138Right-handed alpha
Helix 18
18
B
151 163Right-handed alpha
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There are 8 sheets in PDB entry 1JY5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 48first strand
Strand 2
A
7 14anti-parallel
Strand 3
A
174 182anti-parallel
Strand 4
A
167 171anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 48first strand
Strand 2
A
7 14anti-parallel
Strand 3
A
174 182anti-parallel
Strand 4
A
188 189anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 89first strand
Strand 2
A
92 94anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 150first strand
Strand 2
A
201 202anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 48first strand
Strand 2
B
7 14anti-parallel
Strand 3
B
175 182anti-parallel
Strand 4
B
167 170anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 48first strand
Strand 2
B
7 14anti-parallel
Strand 3
B
175 182anti-parallel
Strand 4
B
188 189anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 89first strand
Strand 2
B
92 94anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
144 150first strand
Strand 2
B
201 204anti-parallel
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