Analysis of interatomic Contacts of Structural Units in PDB entry:
1JYL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JYL entry

There are 4 chains in PDB entry 1JYL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 4LYS 231
B
 ILE 4LYS 231
C
 ILE 4LYS 231
D
 ILE 4LYS 231
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 1JYL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 20Right-handed 310
Helix 2
2
A
27 31Right-handed 310
Helix 3
3
A
37 49Right-handed alpha
Helix 4
4
A
61 65Right-handed 310
Helix 5
5
A
66 73Right-handed alpha
Helix 6
6
A
87 94Right-handed alpha
Helix 7
7
A
166 184Right-handed alpha
Helix 8
8
A
192 197Right-handed alpha
Helix 9
9
A
198 202Right-handed 310
Helix 10
10
A
219 230Right-handed alpha
Helix 11
11
B
16 20Right-handed 310
Helix 12
12
B
27 31Right-handed 310
Helix 13
13
B
37 49Right-handed alpha
Helix 14
14
B
61 65Right-handed 310
Helix 15
15
B
66 73Right-handed alpha
Helix 16
16
B
87 94Right-handed alpha
Helix 17
17
B
166 184Right-handed alpha
Helix 18
18
B
192 197Right-handed alpha
Helix 19
19
B
219 230Right-handed alpha
Helix 20
20
C
16 20Right-handed 310
Helix 21
21
C
27 31Right-handed 310
Helix 22
22
C
37 49Right-handed alpha
Helix 23
23
C
61 64Right-handed 310
Helix 24
24
C
65 73Right-handed alpha
Helix 25
25
C
87 94Right-handed alpha
Helix 26
26
C
95 98Right-handed 310
Helix 27
27
C
166 184Right-handed alpha
Helix 28
28
C
192 197Right-handed alpha
Helix 29
29
C
198 202Right-handed 310
Helix 30
30
C
219 230Right-handed alpha
Helix 31
31
D
16 20Right-handed 310
Helix 32
32
D
37 49Right-handed alpha
Helix 33
33
D
61 65Right-handed 310
Helix 34
34
D
66 73Right-handed alpha
Helix 35
35
D
87 93Right-handed alpha
Helix 36
36
D
166 184Right-handed alpha
Helix 37
37
D
192 197Right-handed alpha
Helix 38
38
D
198 202Right-handed 310
Helix 39
39
D
219 230Right-handed alpha
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There are 12 sheets in PDB entry 1JYL. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 78first strand
Strand 2
A
53 58parallel
Strand 3
A
7 11parallel
Strand 4
A
101 105parallel
Strand 5
A
162 165anti-parallel
Strand 6
A
123 124anti-parallel
Strand 7
A
205 206parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 110first strand
Strand 2
A
214 216anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 140first strand
Strand 2
A
146 158anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 78first strand
Strand 2
B
53 58parallel
Strand 3
B
7 11parallel
Strand 4
B
101 105parallel
Strand 5
B
162 165anti-parallel
Strand 6
B
123 124anti-parallel
Strand 7
B
205 206parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
108 110first strand
Strand 2
B
214 216anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 140first strand
Strand 2
B
146 158anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
75 78first strand
Strand 2
C
53 58parallel
Strand 3
C
7 11parallel
Strand 4
C
101 105parallel
Strand 5
C
162 165anti-parallel
Strand 6
C
123 124anti-parallel
Strand 7
C
205 206parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
108 110first strand
Strand 2
C
214 216anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
127 140first strand
Strand 2
C
146 158anti-parallel
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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
75 78first strand
Strand 2
D
53 58parallel
Strand 3
D
7 11parallel
Strand 4
D
101 105parallel
Strand 5
D
162 165anti-parallel
Strand 6
D
123 124anti-parallel
Strand 7
D
205 206parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
108 110first strand
Strand 2
D
214 216anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
127 140first strand
Strand 2
D
146 158anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il