Analysis of interatomic Contacts of Structural Units in PDB entry:
1JYO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JYO entry

There are 6 chains in PDB entry 1JYO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 1VAL 130
B
 LEU 1VAL 130
C
 LEU 1VAL 130
D
 LEU 1VAL 130
E
 ASP 36LYS 137
F
 ASP 36ASN 139
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 1JYO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1 16Right-handed alpha
Helix 2
2
A
60 77Right-handed alpha
Helix 3
3
A
102 125Right-handed alpha
Helix 4
4
A
126 128Right-handed 310
Helix 5
5
B
1 16Right-handed alpha
Helix 6
6
B
60 77Right-handed alpha
Helix 7
7
B
102 125Right-handed alpha
Helix 8
8
B
126 128Right-handed 310
Helix 9
9
C
1 16Right-handed alpha
Helix 10
10
C
60 77Right-handed alpha
Helix 11
11
C
102 125Right-handed alpha
Helix 12
12
C
126 128Right-handed 310
Helix 13
13
D
1 16Right-handed alpha
Helix 14
14
D
60 77Right-handed alpha
Helix 15
15
D
102 125Right-handed alpha
Helix 16
16
D
126 128Right-handed 310
Helix 17
17
E
61 72Right-handed alpha
Helix 18
18
E
76 90Right-handed alpha
Helix 19
19
E
92 106Right-handed alpha
Helix 20
20
E
110 114Right-handed 310
Helix 21
21
E
121 128Right-handed alpha
Helix 22
22
E
129 137Right-handed alpha
Helix 23
23
F
61 71Right-handed alpha
Helix 24
24
F
76 90Right-handed alpha
Helix 25
25
F
93 106Right-handed alpha
Helix 26
26
F
110 114Right-handed 310
Helix 27
27
F
121 128Right-handed alpha
Helix 28
28
F
129 137Right-handed alpha
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There are 4 sheets in PDB entry 1JYO. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 85first strand
Strand 2
A
90 97anti-parallel
Strand 3
A
45 54anti-parallel
Strand 4
A
35 42anti-parallel
Strand 5
A
26 31anti-parallel
Strand 6
F
116 118anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 85first strand
Strand 2
B
90 97anti-parallel
Strand 3
B
45 54anti-parallel
Strand 4
B
35 42anti-parallel
Strand 5
B
26 31anti-parallel
Strand 6
E
116 118anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
81 85first strand
Strand 2
C
90 97anti-parallel
Strand 3
C
45 54anti-parallel
Strand 4
C
35 42anti-parallel
Strand 5
C
26 31anti-parallel
Strand 6
F
50 52anti-parallel
Strand 7
F
39 40anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
81 85first strand
Strand 2
D
90 97anti-parallel
Strand 3
D
45 54anti-parallel
Strand 4
D
35 42anti-parallel
Strand 5
D
26 31anti-parallel
Strand 6
E
50 54anti-parallel
Strand 7
E
39 40anti-parallel
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