Analysis of interatomic Contacts of Structural Units in PDB entry:
1JYS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JYS entry

There are 2 chains in PDB entry 1JYS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 230
B
 MET 1ALA 230
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 1JYS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 20Right-handed alpha
Helix 2
2
A
51 67Right-handed alpha
Helix 3
3
A
102 106Right-handed 310
Helix 4
4
A
122 136Right-handed alpha
Helix 5
5
A
154 165Right-handed alpha
Helix 6
6
A
174 185Right-handed alpha
Helix 7
7
A
206 230Right-handed alpha
Helix 8
8
B
9 20Right-handed alpha
Helix 9
9
B
51 67Right-handed alpha
Helix 10
10
B
102 106Right-handed 310
Helix 11
11
B
122 136Right-handed alpha
Helix 12
12
B
154 165Right-handed alpha
Helix 13
13
B
174 185Right-handed alpha
Helix 14
14
B
206 230Right-handed alpha
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There are 4 sheets in PDB entry 1JYS. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 28first strand
Strand 2
A
31 38anti-parallel
Strand 3
A
41 47anti-parallel
Strand 4
A
2 7parallel
Strand 5
A
70 79parallel
Strand 6
A
168 172anti-parallel
Strand 7
A
140 147parallel
Strand 8
A
89 97parallel
Strand 9
A
119 120anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 28first strand
Strand 2
A
31 38anti-parallel
Strand 3
A
41 47anti-parallel
Strand 4
A
2 7parallel
Strand 5
A
70 79parallel
Strand 6
A
189 198parallel
Strand 7
A
89 97anti-parallel
Strand 8
A
119 120anti-parallel
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There are 11 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 28first strand
Strand 2
B
31 38anti-parallel
Strand 3
B
41 47anti-parallel
Strand 4
B
2 7parallel
Strand 5
B
70 74parallel
Strand 6
B
189 198parallel
Strand 7
B
76 79parallel
Strand 8
B
168 172anti-parallel
Strand 9
B
140 147parallel
Strand 10
B
89 97parallel
Strand 11
B
119 120anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 28first strand
Strand 2
B
31 38anti-parallel
Strand 3
B
41 47anti-parallel
Strand 4
B
2 7parallel
Strand 5
B
70 74parallel
Strand 6
B
189 198parallel
Strand 7
B
89 97anti-parallel
Strand 8
B
119 120anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il