Analysis of interatomic Contacts of Structural Units in PDB entry:
1JZD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JZD entry

There are 3 chains in PDB entry 1JZD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -3GLY 215
B
 ASP 1SER 214
C
 ARG 8ASN 125
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 1JZD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-3 2Right-handed alpha
Helix 2
2
A
2 12Right-handed alpha
Helix 3
3
A
62 74Right-handed alpha
Helix 4
4
A
75 78Right-handed 310
Helix 5
5
A
98 106Right-handed alpha
Helix 6
6
A
107 114Right-handed alpha
Helix 7
7
A
130 140Right-handed alpha
Helix 8
8
A
144 156Right-handed alpha
Helix 9
9
A
167 178Right-handed alpha
Helix 10
10
A
198 215Right-handed alpha
Helix 11
11
B
2 12Right-handed alpha
Helix 12
12
B
62 67Right-handed alpha
Helix 13
13
B
67 74Right-handed alpha
Helix 14
14
B
75 78Right-handed 310
Helix 15
15
B
98 107Right-handed alpha
Helix 16
16
B
107 114Right-handed alpha
Helix 17
17
B
130 142Right-handed alpha
Helix 18
18
B
144 155Right-handed alpha
Helix 19
19
B
166 177Right-handed alpha
Helix 20
20
B
198 214Right-handed alpha
Helix 21
21
C
13 17Right-handed alpha
Helix 22
22
C
44 46Right-handed 310
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There are 7 sheets in PDB entry 1JZD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 21first strand
Strand 2
A
27 32anti-parallel
Strand 3
A
35 40anti-parallel
Strand 4
A
45 48anti-parallel
Strand 5
B
51 53anti-parallel
Strand 6
B
60 61anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
51 53anti-parallel
Strand 3
B
45 48anti-parallel
Strand 4
B
35 40anti-parallel
Strand 5
B
27 32anti-parallel
Strand 6
B
18 21anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 80first strand
Strand 2
A
116 122anti-parallel
Strand 3
A
88 94parallel
Strand 4
A
184 186anti-parallel
Strand 5
A
192 193anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
79 81first strand
Strand 2
B
116 122anti-parallel
Strand 3
B
88 94parallel
Strand 4
B
184 186anti-parallel
Strand 5
B
192 194anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
47 58first strand
Strand 2
C
79 100anti-parallel
Strand 3
C
28 35anti-parallel
Strand 4
C
18 25anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
47 58first strand
Strand 2
C
79 100anti-parallel
Strand 3
C
113 118anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
64 68first strand
Strand 2
C
72 77anti-parallel
Strand 3
C
39 42anti-parallel
Strand 4
C
102 104anti-parallel
Strand 5
C
108 109anti-parallel
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