Analysis of interatomic Contacts of Structural Units in PDB entry:
1JZJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1JZJ entry

There are 2 chains in PDB entry 1JZJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1LYS 128
B
 ALA 201LYS 328
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 1JZJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
40 45Right-handed alpha
Helix 2
2
A
55 65Right-handed alpha
Helix 3
3
A
66 71Right-handed 310
Helix 4
4
A
100 102Right-handed 310
Helix 5
5
A
116 120Right-handed 310
Helix 6
6
B
240 245Right-handed alpha
Helix 7
7
B
255 266Right-handed alpha
Helix 8
8
B
267 271Right-handed 310
Helix 9
9
B
300 302Right-handed 310
Helix 10
10
B
316 320Right-handed 310
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There are 4 sheets in PDB entry 1JZJ. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 15first strand
Strand 2
A
4 10anti-parallel
Strand 3
A
28 34parallel
Strand 4
A
92 98anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 22first strand
Strand 2
A
122 127parallel
Strand 3
A
108 111anti-parallel
Strand 4
A
49 52anti-parallel
Strand 5
A
82 83anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
204 208first strand
Strand 2
B
228 234parallel
Strand 3
B
292 298anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
219 223first strand
Strand 2
B
322 328parallel
Strand 3
B
308 311anti-parallel
Strand 4
B
249 252anti-parallel
Strand 5
B
282 283anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il