Analysis of interatomic Contacts of Structural Units in PDB entry:
1K0C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1K0C entry

There are 4 chains in PDB entry 1K0C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 102LEU 351
B
 SER 100GLY 353
C
 SER 100GLU 354
D
 SER 100GLY 353
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 61 helices in PDB entry 1K0C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
102 108Right-handed alpha
Helix 2
2
A
122 135Right-handed alpha
Helix 3
3
A
149 152Right-handed 310
Helix 4
4
A
153 160Right-handed alpha
Helix 5
5
A
172 174Right-handed 310
Helix 6
6
A
180 197Right-handed alpha
Helix 7
7
A
205 223Right-handed alpha
Helix 8
8
A
223 236Right-handed alpha
Helix 9
9
A
241 271Right-handed alpha
Helix 10
10
A
307 312Right-handed alpha
Helix 11
11
A
313 318Right-handed alpha
Helix 12
12
A
319 324Right-handed 310
Helix 13
13
A
326 331Right-handed alpha
Helix 14
14
A
331 343Right-handed alpha
Helix 15
15
A
344 351Right-handed alpha
Helix 16
16
B
100 108Right-handed alpha
Helix 17
17
B
122 135Right-handed alpha
Helix 18
18
B
149 152Right-handed 310
Helix 19
19
B
153 160Right-handed alpha
Helix 20
20
B
172 174Right-handed 310
Helix 21
21
B
180 197Right-handed alpha
Helix 22
22
B
205 223Right-handed alpha
Helix 23
23
B
223 236Right-handed alpha
Helix 24
24
B
241 271Right-handed alpha
Helix 25
25
B
307 312Right-handed alpha
Helix 26
26
B
313 318Right-handed alpha
Helix 27
27
B
319 324Right-handed 310
Helix 28
28
B
326 331Right-handed alpha
Helix 29
29
B
331 343Right-handed alpha
Helix 30
30
B
344 353Right-handed alpha
Helix 31
31
C
101 108Right-handed alpha
Helix 32
32
C
122 135Right-handed alpha
Helix 33
33
C
145 152Right-handed 310
Helix 34
34
C
153 158Right-handed alpha
Helix 35
35
C
172 174Right-handed 310
Helix 36
36
C
180 197Right-handed alpha
Helix 37
37
C
205 223Right-handed alpha
Helix 38
38
C
223 236Right-handed alpha
Helix 39
39
C
241 273Right-handed alpha
Helix 40
40
C
293 297Right-handed 310
Helix 41
41
C
307 312Right-handed alpha
Helix 42
42
C
313 318Right-handed alpha
Helix 43
43
C
319 324Right-handed 310
Helix 44
44
C
326 331Right-handed alpha
Helix 45
45
C
331 343Right-handed alpha
Helix 46
46
C
344 352Right-handed alpha
Helix 47
47
D
100 107Right-handed alpha
Helix 48
48
D
122 135Right-handed alpha
Helix 49
49
D
149 152Right-handed 310
Helix 50
50
D
153 158Right-handed alpha
Helix 51
51
D
172 174Right-handed 310
Helix 52
52
D
180 197Right-handed alpha
Helix 53
53
D
205 223Right-handed alpha
Helix 54
54
D
223 236Right-handed alpha
Helix 55
55
D
241 273Right-handed alpha
Helix 56
56
D
307 312Right-handed alpha
Helix 57
57
D
313 318Right-handed alpha
Helix 58
58
D
319 324Right-handed 310
Helix 59
59
D
326 331Right-handed alpha
Helix 60
60
D
331 344Right-handed alpha
Helix 61
61
D
344 351Right-handed alpha
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There are 4 sheets in PDB entry 1K0C. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 143first strand
Strand 2
A
114 118parallel
Strand 3
A
167 170anti-parallel
Strand 4
A
176 179anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
139 143first strand
Strand 2
B
114 118parallel
Strand 3
B
167 170anti-parallel
Strand 4
B
176 179anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
139 143first strand
Strand 2
C
114 118parallel
Strand 3
C
167 170anti-parallel
Strand 4
C
176 179anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
139 143first strand
Strand 2
D
114 118parallel
Strand 3
D
167 170anti-parallel
Strand 4
D
176 179anti-parallel
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