Analysis of interatomic Contacts of Structural Units in PDB entry:
1K0D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1K0D entry

There are 4 chains in PDB entry 1K0D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 109LEU 351
B
 SER 100GLY 353
C
 SER 100GLU 354
D
 TYR 99GLY 353
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 1K0D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
122 135Right-handed alpha
Helix 2
2
A
149 152Right-handed 310
Helix 3
3
A
153 158Right-handed alpha
Helix 4
4
A
180 197Right-handed alpha
Helix 5
5
A
205 223Right-handed alpha
Helix 6
6
A
223 236Right-handed alpha
Helix 7
7
A
241 272Right-handed alpha
Helix 8
8
A
307 312Right-handed alpha
Helix 9
9
A
313 318Right-handed alpha
Helix 10
10
A
319 324Right-handed 310
Helix 11
11
A
326 331Right-handed alpha
Helix 12
12
A
331 343Right-handed alpha
Helix 13
13
A
344 351Right-handed alpha
Helix 14
14
B
100 106Right-handed alpha
Helix 15
15
B
122 135Right-handed alpha
Helix 16
16
B
145 152Right-handed 310
Helix 17
17
B
153 160Right-handed alpha
Helix 18
18
B
172 174Right-handed 310
Helix 19
19
B
180 197Right-handed alpha
Helix 20
20
B
205 223Right-handed alpha
Helix 21
21
B
223 236Right-handed alpha
Helix 22
22
B
241 271Right-handed alpha
Helix 23
23
B
307 312Right-handed alpha
Helix 24
24
B
313 318Right-handed alpha
Helix 25
25
B
319 324Right-handed 310
Helix 26
26
B
326 331Right-handed alpha
Helix 27
27
B
331 343Right-handed alpha
Helix 28
28
B
344 353Right-handed alpha
Helix 29
29
C
101 106Right-handed alpha
Helix 30
30
C
122 135Right-handed alpha
Helix 31
31
C
149 152Right-handed 310
Helix 32
32
C
153 160Right-handed alpha
Helix 33
33
C
172 174Right-handed 310
Helix 34
34
C
180 197Right-handed alpha
Helix 35
35
C
205 223Right-handed alpha
Helix 36
36
C
223 236Right-handed alpha
Helix 37
37
C
241 274Right-handed alpha
Helix 38
38
C
307 312Right-handed alpha
Helix 39
39
C
313 318Right-handed alpha
Helix 40
40
C
319 324Right-handed 310
Helix 41
41
C
326 331Right-handed alpha
Helix 42
42
C
331 343Right-handed alpha
Helix 43
43
C
344 352Right-handed alpha
Helix 44
44
D
99 106Right-handed alpha
Helix 45
45
D
122 136Right-handed alpha
Helix 46
46
D
145 152Right-handed 310
Helix 47
47
D
153 158Right-handed alpha
Helix 48
48
D
172 174Right-handed 310
Helix 49
49
D
180 197Right-handed alpha
Helix 50
50
D
205 223Right-handed alpha
Helix 51
51
D
223 236Right-handed alpha
Helix 52
52
D
241 273Right-handed alpha
Helix 53
53
D
307 312Right-handed alpha
Helix 54
54
D
313 318Right-handed alpha
Helix 55
55
D
319 324Right-handed 310
Helix 56
56
D
326 331Right-handed alpha
Helix 57
57
D
331 343Right-handed alpha
Helix 58
58
D
344 352Right-handed alpha
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There are 4 sheets in PDB entry 1K0D. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 143first strand
Strand 2
A
114 118parallel
Strand 3
A
167 170anti-parallel
Strand 4
A
176 179anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
139 143first strand
Strand 2
B
114 118parallel
Strand 3
B
167 170anti-parallel
Strand 4
B
176 179anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
139 143first strand
Strand 2
C
114 118parallel
Strand 3
C
167 170anti-parallel
Strand 4
C
176 179anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
139 143first strand
Strand 2
D
114 118parallel
Strand 3
D
167 170anti-parallel
Strand 4
D
176 179anti-parallel
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