Analysis of interatomic Contacts of Structural Units in PDB entry:
1K0F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1K0F entry

There is 1 chain in PDB entry 1K0F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 32ARG 308
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 1K0F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
41 52Right-handed alpha
Helix 2
2
A
53 55Right-handed 310
Helix 3
3
A
73 83Right-handed alpha
Helix 4
4
A
94 96Right-handed 310
Helix 5
5
A
97 105Right-handed alpha
Helix 6
6
A
114 117Right-handed 310
Helix 7
7
A
118 122Right-handed 310
Helix 8
8
A
133 136Right-handed 310
Helix 9
9
A
137 156Right-handed alpha
Helix 10
10
A
159 188Right-handed alpha
Helix 11
11
A
189 192Right-handed 310
Helix 12
12
A
202 210Right-handed alpha
Helix 13
13
A
226 240Right-handed alpha
Helix 14
14
A
252 254Right-handed 310
Helix 15
15
A
255 265Right-handed alpha
Helix 16
16
A
290 305Right-handed alpha
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There are 4 sheets in PDB entry 1K0F. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 61first strand
Strand 2
A
35 40parallel
Strand 3
A
85 88parallel
Strand 4
A
109 112parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 125first strand
Strand 2
A
129 130anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 199first strand
Strand 2
A
212 217parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 248first strand
Strand 2
A
271 276parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il