Analysis of interatomic Contacts of Structural Units in PDB entry:
1K0L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1K0L entry

There is 1 chain in PDB entry 1K0L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 394
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 1K0L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 24Right-handed alpha
Helix 2
2
A
35 41Right-handed alpha
Helix 3
3
A
49 59Right-handed alpha
Helix 4
4
A
62 69Right-handed alpha
Helix 5
5
A
87 93Right-handed alpha
Helix 6
6
A
101 117Right-handed alpha
Helix 7
7
A
165 169Right-handed 310
Helix 8
8
A
170 174Right-handed 310
Helix 9
9
A
230 234Right-handed 310
Helix 10
10
A
235 246Right-handed alpha
Helix 11
11
A
248 255Right-handed alpha
Helix 12
12
A
285 287Right-handed 310
Helix 13
13
A
292 296Right-handed 310
Helix 14
14
A
297 320Right-handed alpha
Helix 15
15
A
321 326Right-handed 310
Helix 16
16
A
327 351Right-handed alpha
Helix 17
17
A
357 374Right-handed alpha
Helix 18
18
A
374 387Right-handed alpha
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There are 4 sheets in PDB entry 1K0L. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 121first strand
Strand 2
A
28 31parallel
Strand 3
A
5 8parallel
Strand 4
A
154 157parallel
Strand 5
A
281 283parallel
Strand 6
A
277 278anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 48first strand
Strand 2
A
97 99anti-parallel
Strand 3
A
70 72anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 86first strand
Strand 2
A
75 79anti-parallel
Strand 3
A
200 202parallel
Strand 4
A
209 213anti-parallel
Strand 5
A
219 225anti-parallel
Strand 6
A
175 190anti-parallel
Strand 7
A
262 274anti-parallel
Strand 8
A
289 290anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 130first strand
Strand 2
A
138 143anti-parallel
Strand 3
A
146 151anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il