Analysis of interatomic Contacts of Structural Units in PDB entry:
1K0M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1K0M entry

There are 2 chains in PDB entry 1K0M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 6LEU 240
B
 PRO 6LYS 241
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 1K0M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 38Right-handed alpha
Helix 2
2
A
52 59Right-handed alpha
Helix 3
3
A
76 88Right-handed alpha
Helix 4
4
A
100 105Right-handed 310
Helix 5
5
A
109 120Right-handed alpha
Helix 6
6
A
122 146Right-handed alpha
Helix 7
7
A
155 161Right-handed alpha
Helix 8
8
A
174 196Right-handed alpha
Helix 9
9
A
203 215Right-handed alpha
Helix 10
10
A
216 221Right-handed alpha
Helix 11
11
A
225 233Right-handed alpha
Helix 12
12
B
24 38Right-handed alpha
Helix 13
13
B
52 59Right-handed alpha
Helix 14
14
B
76 88Right-handed alpha
Helix 15
15
B
100 105Right-handed 310
Helix 16
16
B
109 120Right-handed alpha
Helix 17
17
B
122 146Right-handed alpha
Helix 18
18
B
155 160Right-handed alpha
Helix 19
19
B
174 196Right-handed alpha
Helix 20
20
B
203 215Right-handed alpha
Helix 21
21
B
216 221Right-handed alpha
Helix 22
22
B
225 233Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 1K0M. Click on sheet of interest to get list of strands forming it: A, B,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 46first strand
Strand 2
A
8 13parallel
Strand 3
A
66 69anti-parallel
Strand 4
A
72 75anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 46first strand
Strand 2
B
8 13parallel
Strand 3
B
66 69anti-parallel
Strand 4
B
72 75anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il