Analysis of interatomic Contacts of Structural Units in PDB entry:
1K47


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1K47 entry

There are 6 chains in PDB entry 1K47 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 1001ILE 329
B
 HIS 1001ILE 329
C
 HIS 1001ILE 329
D
 HIS 1001ILE 329
E
 HIS 1001ILE 329
F
 HIS 1001ILE 329
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 77 helices in PDB entry 1K47. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 20Right-handed 310
Helix 2
2
A
62 80Right-handed alpha
Helix 3
3
A
93 98Right-handed alpha
Helix 4
4
A
105 122Right-handed alpha
Helix 5
5
A
127 142Right-handed alpha
Helix 6
6
A
148 157Right-handed alpha
Helix 7
7
A
166 177Right-handed alpha
Helix 8
8
A
178 185Right-handed alpha
Helix 9
9
A
213 222Right-handed alpha
Helix 10
10
A
225 246Right-handed alpha
Helix 11
11
A
247 266Right-handed alpha
Helix 12
12
A
271 280Right-handed alpha
Helix 13
13
A
305 319Right-handed alpha
Helix 14
14
B
16 20Right-handed 310
Helix 15
15
B
62 80Right-handed alpha
Helix 16
16
B
93 99Right-handed alpha
Helix 17
17
B
105 122Right-handed alpha
Helix 18
18
B
127 142Right-handed alpha
Helix 19
19
B
148 157Right-handed alpha
Helix 20
20
B
166 175Right-handed alpha
Helix 21
21
B
178 185Right-handed alpha
Helix 22
22
B
213 222Right-handed alpha
Helix 23
23
B
225 245Right-handed alpha
Helix 24
24
B
247 266Right-handed alpha
Helix 25
25
B
271 280Right-handed alpha
Helix 26
26
B
305 319Right-handed alpha
Helix 27
27
C
16 20Right-handed 310
Helix 28
28
C
62 80Right-handed alpha
Helix 29
29
C
93 98Right-handed alpha
Helix 30
30
C
105 122Right-handed alpha
Helix 31
31
C
127 141Right-handed alpha
Helix 32
32
C
148 157Right-handed alpha
Helix 33
33
C
166 177Right-handed alpha
Helix 34
34
C
178 185Right-handed alpha
Helix 35
35
C
213 222Right-handed alpha
Helix 36
36
C
225 245Right-handed alpha
Helix 37
37
C
247 266Right-handed alpha
Helix 38
38
C
271 280Right-handed alpha
Helix 39
39
C
305 319Right-handed alpha
Helix 40
40
D
16 20Right-handed 310
Helix 41
41
D
62 80Right-handed alpha
Helix 42
42
D
93 98Right-handed alpha
Helix 43
43
D
105 122Right-handed alpha
Helix 44
44
D
127 141Right-handed alpha
Helix 45
45
D
148 157Right-handed alpha
Helix 46
46
D
166 177Right-handed alpha
Helix 47
47
D
178 185Right-handed alpha
Helix 48
48
D
214 222Right-handed alpha
Helix 49
49
D
225 246Right-handed alpha
Helix 50
50
D
247 266Right-handed alpha
Helix 51
51
D
271 280Right-handed alpha
Helix 52
52
D
305 319Right-handed alpha
Helix 53
53
E
16 20Right-handed 310
Helix 54
54
E
62 80Right-handed alpha
Helix 55
55
E
93 98Right-handed alpha
Helix 56
56
E
105 122Right-handed alpha
Helix 57
57
E
127 142Right-handed alpha
Helix 58
58
E
148 157Right-handed alpha
Helix 59
59
E
166 174Right-handed alpha
Helix 60
60
E
178 185Right-handed alpha
Helix 61
61
E
213 222Right-handed alpha
Helix 62
62
E
225 246Right-handed alpha
Helix 63
63
E
247 266Right-handed alpha
Helix 64
64
E
271 280Right-handed alpha
Helix 65
65
E
305 320Right-handed alpha
Helix 66
66
F
16 20Right-handed 310
Helix 67
67
F
62 80Right-handed alpha
Helix 68
68
F
105 122Right-handed alpha
Helix 69
69
F
127 142Right-handed alpha
Helix 70
70
F
148 157Right-handed alpha
Helix 71
71
F
166 177Right-handed alpha
Helix 72
72
F
178 185Right-handed alpha
Helix 73
73
F
213 222Right-handed alpha
Helix 74
74
F
225 245Right-handed alpha
Helix 75
75
F
247 266Right-handed alpha
Helix 76
76
F
271 280Right-handed alpha
Helix 77
77
F
305 320Right-handed alpha
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There are 9 sheets in PDB entry 1K47. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 14 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 193first strand
Strand 2
A
160 163anti-parallel
Strand 3
A
24 40anti-parallel
Strand 4
A
2 13anti-parallel
Strand 5
A
24 40anti-parallel
Strand 6
A
87 92anti-parallel
Strand 7
A
45 49parallel
Strand 8
D
45 49anti-parallel
Strand 9
D
87 92parallel
Strand 10
D
24 40anti-parallel
Strand 11
D
2 13anti-parallel
Strand 12
D
24 40anti-parallel
Strand 13
D
160 163anti-parallel
Strand 14
D
190 193anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
286 290first strand
Strand 2
A
298 303anti-parallel
Strand 3
A
200 206anti-parallel
Strand 4
A
322 329anti-parallel
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There are 15 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 13first strand
Strand 2
B
24 40anti-parallel
Strand 3
B
160 163anti-parallel
Strand 4
B
190 193anti-parallel
Strand 5
B
160 163anti-parallel
Strand 6
B
24 40anti-parallel
Strand 7
B
87 92anti-parallel
Strand 8
B
45 49parallel
Strand 9
F
45 49anti-parallel
Strand 10
F
87 92parallel
Strand 11
F
24 40anti-parallel
Strand 12
F
2 13anti-parallel
Strand 13
F
24 40anti-parallel
Strand 14
F
160 163anti-parallel
Strand 15
F
190 193anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
322 329first strand
Strand 2
B
200 207anti-parallel
Strand 3
B
297 303anti-parallel
Strand 4
B
286 290anti-parallel
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There are 14 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
190 193first strand
Strand 2
C
160 163anti-parallel
Strand 3
C
24 40anti-parallel
Strand 4
C
2 13anti-parallel
Strand 5
C
24 40anti-parallel
Strand 6
C
87 92anti-parallel
Strand 7
C
45 49parallel
Strand 8
E
45 49anti-parallel
Strand 9
E
87 92parallel
Strand 10
E
24 40anti-parallel
Strand 11
E
2 13anti-parallel
Strand 12
E
24 40anti-parallel
Strand 13
E
160 163anti-parallel
Strand 14
E
190 193anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
322 328first strand
Strand 2
D
201 206anti-parallel
Strand 3
D
298 303anti-parallel
Strand 4
D
286 290anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
286 290first strand
Strand 2
C
298 303anti-parallel
Strand 3
C
200 206anti-parallel
Strand 4
C
322 329anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
286 290first strand
Strand 2
E
298 303anti-parallel
Strand 3
E
200 206anti-parallel
Strand 4
E
322 329anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
322 329first strand
Strand 2
F
200 206anti-parallel
Strand 3
F
298 303anti-parallel
Strand 4
F
286 290anti-parallel
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