Analysis of interatomic Contacts of Structural Units in PDB entry:
1K5C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1K5C entry

There is 1 chain in PDB entry 1K5C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 3LEU 335
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 3 helices in PDB entry 1K5C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 14Right-handed 310
Helix 2
2
A
80 84Right-handed 310
Helix 3
3
A
141 148Right-handed 310
Back to top of page

There is 1 sheet ( A) in PDB entry 1K5C.

There are 43 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 5first strand
Strand 2
A
19 22parallel
Strand 3
A
42 45parallel
Strand 4
A
61 71parallel
Strand 5
A
33 35parallel
Strand 6
A
61 71parallel
Strand 7
A
101 110parallel
Strand 8
A
122 134parallel
Strand 9
A
155 158parallel
Strand 10
A
176 187parallel
Strand 11
A
207 214parallel
Strand 12
A
237 244parallel
Strand 13
A
275 280parallel
Strand 14
A
303 304parallel
Strand 15
A
275 280parallel
Strand 16
A
237 244parallel
Strand 17
A
207 214parallel
Strand 18
A
176 187parallel
Strand 19
A
162 165parallel
Strand 20
A
122 134parallel
Strand 21
A
162 165parallel
Strand 22
A
176 187parallel
Strand 23
A
197 202parallel
Strand 24
A
217 230parallel
Strand 25
A
247 262parallel
Strand 26
A
294 299parallel
Strand 27
A
322 323parallel
Strand 28
A
294 299parallel
Strand 29
A
247 262parallel
Strand 30
A
285 289parallel
Strand 31
A
306 315parallel
Strand 32
A
328 333parallel
Strand 33
A
306 315parallel
Strand 34
A
285 289parallel
Strand 35
A
247 262parallel
Strand 36
A
217 230parallel
Strand 37
A
190 192parallel
Strand 38
A
168 170parallel
Strand 39
A
137 139parallel
Strand 40
A
113 115parallel
Strand 41
A
76 78parallel
Strand 42
A
49 51parallel
Strand 43
A
25 27parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il