Analysis of interatomic Contacts of Structural Units in PDB entry:
1K5J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1K5J entry

There are 5 chains in PDB entry 1K5J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 15ALA 119
B
 SER 16ALA 119
C
 SER 16VAL 118
D
 SER 16VAL 118
E
 VAL 15ALA 119
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 1K5J

There are 15 sheets in PDB entry 1K5J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 23first strand
Strand 2
A
111 118anti-parallel
Strand 3
A
44 52anti-parallel
Strand 4
A
88 90anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 23first strand
Strand 2
A
111 118anti-parallel
Strand 3
A
44 52anti-parallel
Strand 4
A
95 96anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 32first strand
Strand 2
A
100 106anti-parallel
Strand 3
A
61 67anti-parallel
Strand 4
A
74 81anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 23first strand
Strand 2
B
111 118anti-parallel
Strand 3
B
44 52anti-parallel
Strand 4
B
88 90anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 23first strand
Strand 2
B
111 118anti-parallel
Strand 3
B
44 52anti-parallel
Strand 4
B
95 96anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 32first strand
Strand 2
B
100 106anti-parallel
Strand 3
B
61 69anti-parallel
Strand 4
B
72 81anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
17 23first strand
Strand 2
C
111 117anti-parallel
Strand 3
C
45 52anti-parallel
Strand 4
C
88 90anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
17 23first strand
Strand 2
C
111 117anti-parallel
Strand 3
C
45 52anti-parallel
Strand 4
C
95 96anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
29 32first strand
Strand 2
C
100 106anti-parallel
Strand 3
C
61 66anti-parallel
Strand 4
C
76 81anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
17 23first strand
Strand 2
D
111 117anti-parallel
Strand 3
D
45 52anti-parallel
Strand 4
D
88 90anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
17 23first strand
Strand 2
D
111 117anti-parallel
Strand 3
D
45 52anti-parallel
Strand 4
D
95 96anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
29 32first strand
Strand 2
D
100 106anti-parallel
Strand 3
D
61 66anti-parallel
Strand 4
D
75 81anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
16 23first strand
Strand 2
E
111 118anti-parallel
Strand 3
E
44 52anti-parallel
Strand 4
E
88 90anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
16 23first strand
Strand 2
E
111 118anti-parallel
Strand 3
E
44 52anti-parallel
Strand 4
E
95 96anti-parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
29 32first strand
Strand 2
E
100 106anti-parallel
Strand 3
E
61 66anti-parallel
Strand 4
E
75 81anti-parallel
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