Analysis of interatomic Contacts of Structural Units in PDB entry:
1KAE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1KAE entry

There are 2 chains in PDB entry 1KAE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1ALA 434
B
 MSE 1ALA 434
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 1KAE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 12Right-handed 310
Helix 2
2
A
13 21Right-handed alpha
Helix 3
3
A
29 55Right-handed alpha
Helix 4
4
A
69 80Right-handed alpha
Helix 5
5
A
81 101Right-handed alpha
Helix 6
6
A
139 153Right-handed alpha
Helix 7
7
A
166 176Right-handed alpha
Helix 8
8
A
185 196Right-handed alpha
Helix 9
9
A
211 224Right-handed alpha
Helix 10
10
A
248 261Right-handed alpha
Helix 11
11
A
274 290Right-handed alpha
Helix 12
12
A
294 303Right-handed alpha
Helix 13
13
A
312 324Right-handed alpha
Helix 14
14
A
334 339Right-handed alpha
Helix 15
15
A
340 342Right-handed 310
Helix 16
16
A
355 362Right-handed alpha
Helix 17
17
A
373 377Right-handed 310
Helix 18
18
A
382 385Right-handed 310
Helix 19
19
A
396 414Right-handed alpha
Helix 20
20
A
416 434Right-handed alpha
Helix 21
21
B
10 12Right-handed 310
Helix 22
22
B
13 21Right-handed alpha
Helix 23
23
B
29 59Right-handed alpha
Helix 24
24
B
69 80Right-handed alpha
Helix 25
25
B
81 101Right-handed alpha
Helix 26
26
B
139 153Right-handed alpha
Helix 27
27
B
166 176Right-handed alpha
Helix 28
28
B
185 196Right-handed alpha
Helix 29
29
B
211 224Right-handed alpha
Helix 30
30
B
248 261Right-handed alpha
Helix 31
31
B
274 291Right-handed alpha
Helix 32
32
B
295 303Right-handed alpha
Helix 33
33
B
312 324Right-handed alpha
Helix 34
34
B
334 339Right-handed alpha
Helix 35
35
B
340 342Right-handed 310
Helix 36
36
B
355 362Right-handed alpha
Helix 37
37
B
373 377Right-handed 310
Helix 38
38
B
382 385Right-handed 310
Helix 39
39
B
396 414Right-handed alpha
Helix 40
40
B
416 434Right-handed alpha
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There are 4 sheets in PDB entry 1KAE. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 8first strand
Strand 2
A
306 309parallel
Strand 3
A
267 272parallel
Strand 4
A
238 243parallel
Strand 5
A
327 331parallel
Strand 6
A
347 350parallel
Strand 7
B
387 395parallel
Strand 8
B
115 123anti-parallel
Strand 9
B
107 110anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 112first strand
Strand 2
A
115 123anti-parallel
Strand 3
A
387 395anti-parallel
Strand 4
B
347 350parallel
Strand 5
B
327 331parallel
Strand 6
B
238 243parallel
Strand 7
B
267 272parallel
Strand 8
B
306 309parallel
Strand 9
B
6 8parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 183first strand
Strand 2
A
156 161parallel
Strand 3
A
126 130parallel
Strand 4
A
205 207parallel
Strand 5
A
229 230parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
180 183first strand
Strand 2
B
156 161parallel
Strand 3
B
126 130parallel
Strand 4
B
205 207parallel
Strand 5
B
229 230parallel
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