Analysis of interatomic Contacts of Structural Units in PDB entry:
1KAG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1KAG entry

There are 2 chains in PDB entry 1KAG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 3GLU 171
B
 GLU 3GLU 171
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 1KAG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 28Right-handed alpha
Helix 2
2
A
35 44Right-handed alpha
Helix 3
3
A
46 72Right-handed alpha
Helix 4
4
A
83 86Right-handed 310
Helix 5
5
A
87 98Right-handed alpha
Helix 6
6
A
106 112Right-handed alpha
Helix 7
7
A
129 148Right-handed alpha
Helix 8
8
A
158 171Right-handed alpha
Helix 9
9
B
16 29Right-handed alpha
Helix 10
10
B
35 44Right-handed alpha
Helix 11
11
B
46 72Right-handed alpha
Helix 12
12
B
83 86Right-handed 310
Helix 13
13
B
87 98Right-handed alpha
Helix 14
14
B
106 112Right-handed alpha
Helix 15
15
B
129 148Right-handed alpha
Helix 16
16
B
158 170Right-handed alpha
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There are 2 sheets in PDB entry 1KAG. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 34first strand
Strand 2
A
76 79parallel
Strand 3
A
7 10parallel
Strand 4
A
99 103parallel
Strand 5
A
150 152parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 34first strand
Strand 2
B
76 79parallel
Strand 3
B
7 10parallel
Strand 4
B
99 103parallel
Strand 5
B
150 152parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il