Analysis of interatomic Contacts of Structural Units in PDB entry:
1KB9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1KB9 entry

There are 11 chains in PDB entry 1KB9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 27TRP 457
B
 LEU 17LEU 368
C
 MET 1LYS 385
D
 MET 62PRO 307
E
 LYS 31GLY 215
F
 VAL 74LYS 147
G
 GLN 3LYS 127
H
 GLY 2VAL 94
I
 SER 4ALA 58
J
 GLU 1PRO 127
K
 ASP 1LYS 107
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 91 helices in PDB entry 1KB9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
58 62Right-handed 310
Helix 2
2
A
68 78Right-handed alpha
Helix 3
3
A
79 89Right-handed alpha
Helix 4
4
A
109 113Right-handed 310
Helix 5
5
A
114 125Right-handed alpha
Helix 6
6
A
135 155Right-handed alpha
Helix 7
7
A
155 169Right-handed alpha
Helix 8
8
A
172 176Right-handed 310
Helix 9
9
A
181 186Right-handed alpha
Helix 10
10
A
189 201Right-handed alpha
Helix 11
11
A
215 226Right-handed alpha
Helix 12
12
A
274 286Right-handed alpha
Helix 13
13
A
294 298Right-handed 310
Helix 14
14
A
301 308Right-handed alpha
Helix 15
15
A
339 357Right-handed alpha
Helix 16
16
A
359 379Right-handed alpha
Helix 17
17
A
382 398Right-handed alpha
Helix 18
18
A
402 412Right-handed alpha
Helix 19
19
A
414 426Right-handed alpha
Helix 20
20
A
444 451Right-handed alpha
Helix 21
21
B
38 42Right-handed 310
Helix 22
22
B
46 55Right-handed alpha
Helix 23
23
B
63 75Right-handed alpha
Helix 24
24
B
97 112Right-handed alpha
Helix 25
25
B
115 122Right-handed alpha
Helix 26
26
B
122 136Right-handed alpha
Helix 27
27
B
137 151Right-handed alpha
Helix 28
28
B
168 180Right-handed alpha
Helix 29
29
B
181 183Right-handed 310
Helix 30
30
B
193 203Right-handed alpha
Helix 31
31
B
249 261Right-handed alpha
Helix 32
32
B
265 271Right-handed 310
Helix 33
33
B
293 310Right-handed alpha
Helix 34
34
B
319 325Right-handed alpha
Helix 35
35
B
328 332Right-handed 310
Helix 36
36
B
358 362Right-handed 310
Helix 37
37
C
2 7Right-handed alpha
Helix 38
38
C
9 18Right-handed alpha
Helix 39
39
C
27 30Right-handed 310
Helix 40
40
C
31 52Right-handed alpha
Helix 41
41
C
60 71Right-handed alpha
Helix 42
42
C
74 103Right-handed alpha
Helix 43
43
C
110 135Right-handed alpha
Helix 44
44
C
137 150Right-handed alpha
Helix 45
45
C
151 154Right-handed 310
Helix 46
46
C
157 167Right-handed alpha
Helix 47
47
C
172 205Right-handed alpha
Helix 48
48
C
223 247Right-handed alpha
Helix 49
49
C
253 258Right-handed 310
Helix 50
50
C
272 274Right-handed 310
Helix 51
51
C
275 284Right-handed alpha
Helix 52
52
C
287 301Right-handed alpha
Helix 53
53
C
304 309Right-handed alpha
Helix 54
54
C
319 341Right-handed alpha
Helix 55
55
C
345 365Right-handed alpha
Helix 56
56
C
365 381Right-handed alpha
Helix 57
57
D
63 68Right-handed alpha
Helix 58
58
D
86 100Right-handed alpha
Helix 59
59
D
101 104Right-handed 310
Helix 60
60
D
111 116Right-handed 310
Helix 61
61
D
121 131Right-handed alpha
Helix 62
62
D
161 168Right-handed alpha
Helix 63
63
D
186 197Right-handed alpha
Helix 64
64
D
243 260Right-handed alpha
Helix 65
65
D
262 297Right-handed alpha
Helix 66
66
E
50 81Right-handed alpha
Helix 67
67
E
85 89Right-handed 310
Helix 68
68
E
99 101Right-handed 310
Helix 69
69
E
122 131Right-handed alpha
Helix 70
70
E
132 132Right-handed 310
Helix 71
71
E
133 137Right-handed 310
Helix 72
72
E
142 147Right-handed alpha
Helix 73
73
F
76 87Right-handed alpha
Helix 74
74
F
88 110Right-handed alpha
Helix 75
75
F
123 139Right-handed alpha
Helix 76
76
F
141 146Right-handed 310
Helix 77
77
G
4 18Right-handed alpha
Helix 78
78
G
18 37Right-handed alpha
Helix 79
79
G
38 42Right-handed 310
Helix 80
80
G
44 49Right-handed 310
Helix 81
81
G
53 63Right-handed alpha
Helix 82
82
G
64 84Right-handed alpha
Helix 83
83
G
89 93Right-handed 310
Helix 84
84
G
103 122Right-handed alpha
Helix 85
85
H
31 34Right-handed 310
Helix 86
86
H
55 81Right-handed alpha
Helix 87
87
H
85 93Right-handed alpha
Helix 88
88
I
6 11Right-handed alpha
Helix 89
89
I
17 44Right-handed alpha
Helix 90
90
I
48 55Right-handed alpha
Helix 91
91
J
87 91Right-handed 310
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There are 15 sheets in PDB entry 1KB9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 33first strand
Strand 2
A
37 41anti-parallel
Strand 3
A
206 211parallel
Strand 4
A
49 55anti-parallel
Strand 5
A
102 108anti-parallel
Strand 6
A
92 97anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
287 289first strand
Strand 2
A
314 321anti-parallel
Strand 3
A
326 334anti-parallel
Strand 4
A
259 266anti-parallel
Strand 5
A
432 437anti-parallel
Strand 6
A
247 252parallel
Strand 7
H
24 29anti-parallel
Strand 8
D
299 302anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 22first strand
Strand 2
B
185 190parallel
Strand 3
B
28 35anti-parallel
Strand 4
B
87 94anti-parallel
Strand 5
B
76 82anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
228 232first strand
Strand 2
B
352 357parallel
Strand 3
B
237 245anti-parallel
Strand 4
B
283 291anti-parallel
Strand 5
B
273 278anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
21 23first strand
Strand 2
C
218 220anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
133 135first strand
Strand 2
D
146 148anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
213 214first strand
Strand 2
D
222 223anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
94 97first strand
Strand 2
E
211 214anti-parallel
Strand 3
E
205 208anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
106 111first strand
Strand 2
E
114 120anti-parallel
Strand 3
E
152 156anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
167 168first strand
Strand 2
E
174 178anti-parallel
Strand 3
E
183 186anti-parallel
Strand 4
E
191 193anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
3 8first strand
Strand 2
J
18 25anti-parallel
Strand 3
J
78 83anti-parallel
Strand 4
J
71 73anti-parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
106 112first strand
Strand 2
J
92 102anti-parallel
Strand 3
J
34 40anti-parallel
Strand 4
J
46 53anti-parallel
Strand 5
J
58 60anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
106 112first strand
Strand 2
J
92 102anti-parallel
Strand 3
J
116 120anti-parallel
Strand 4
J
11 12parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
4 7first strand
Strand 2
K
19 25anti-parallel
Strand 3
K
70 75anti-parallel
Strand 4
K
66 67anti-parallel
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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
53 54first strand
Strand 2
K
44 49anti-parallel
Strand 3
K
33 38anti-parallel
Strand 4
K
85 90anti-parallel
Strand 5
K
102 103anti-parallel
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