Analysis of interatomic Contacts of Structural Units in PDB entry:
1KBG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1KBG entry

There are 4 chains in PDB entry 1KBG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
 GLY 1TRP 274
L
 ILE 1MET 99
P
 ARG 1TYR 5
P
 GLY 7LEU 8
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 1KBG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
H
50 54Right-handed 310
Helix 2
2
H
57 85Right-handed alpha
Helix 3
3
H
138 150Right-handed alpha
Helix 4
4
H
152 161Right-handed alpha
Helix 5
5
H
163 174Right-handed alpha
Helix 6
6
H
176 179Right-handed alpha
Helix 7
7
H
254 256Right-handed 310
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There are 6 sheets in PDB entry 1KBG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
45 47first strand
Strand 2
H
31 37anti-parallel
Strand 3
H
21 28anti-parallel
Strand 4
H
3 12anti-parallel
Strand 5
H
94 103anti-parallel
Strand 6
H
109 118anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
124 126first strand
Strand 2
H
133 135anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
186 194first strand
Strand 2
H
198 206anti-parallel
Strand 3
H
243 250anti-parallel
Strand 4
H
228 230anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
214 219first strand
Strand 2
H
257 262anti-parallel
Strand 3
H
270 272anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
6 11first strand
Strand 2
L
20 28anti-parallel
Strand 3
L
64 71anti-parallel
Strand 4
L
50 52anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
36 41first strand
Strand 2
L
78 83anti-parallel
Strand 3
L
91 94anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il