Analysis of interatomic Contacts of Structural Units in PDB entry:
1KBZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1KBZ entry

There is 1 chain in PDB entry 1KBZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1THR 298
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 1KBZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 20Right-handed alpha
Helix 2
2
A
42 54Right-handed alpha
Helix 3
3
A
66 73Right-handed alpha
Helix 4
4
A
73 82Right-handed alpha
Helix 5
5
A
82 96Right-handed alpha
Helix 6
6
A
106 108Right-handed 310
Helix 7
7
A
126 143Right-handed alpha
Helix 8
8
A
161 173Right-handed alpha
Helix 9
9
A
189 206Right-handed alpha
Helix 10
10
A
207 210Right-handed 310
Helix 11
11
A
223 237Right-handed alpha
Helix 12
12
A
268 276Right-handed alpha
Helix 13
13
A
281 295Right-handed alpha
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There are 4 sheets in PDB entry 1KBZ. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 28first strand
Strand 2
A
2 6parallel
Strand 3
A
57 60parallel
Strand 4
A
98 104parallel
Strand 5
A
146 151parallel
Strand 6
A
211 214parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 155first strand
Strand 2
A
187 188parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 179first strand
Strand 2
A
245 249parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 184first strand
Strand 2
A
221 222anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il