Analysis of interatomic Contacts of Structural Units in PDB entry:
1KCD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1KCD entry

There is 1 chain in PDB entry 1KCD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 3LEU 335
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 1KCD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 14Right-handed 310
Helix 2
2
A
80 84Right-handed 310
Helix 3
3
A
141 148Right-handed 310
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There are 2 sheets in PDB entry 1KCD. Click on sheet of interest to get list of strands forming it: A, B,

There are 46 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 5first strand
Strand 2
A
19 22parallel
Strand 3
A
42 45parallel
Strand 4
A
61 71parallel
Strand 5
A
33 35parallel
Strand 6
A
61 71parallel
Strand 7
A
101 110parallel
Strand 8
A
122 134parallel
Strand 9
A
155 158parallel
Strand 10
A
176 187parallel
Strand 11
A
162 165parallel
Strand 12
A
122 134parallel
Strand 13
A
162 165parallel
Strand 14
A
176 187parallel
Strand 15
A
197 202parallel
Strand 16
A
217 230parallel
Strand 17
A
247 262parallel
Strand 18
A
285 289parallel
Strand 19
A
312 315parallel
Strand 20
A
285 289parallel
Strand 21
A
247 262parallel
Strand 22
A
294 299parallel
Strand 23
A
322 323parallel
Strand 24
A
294 299parallel
Strand 25
A
247 262parallel
Strand 26
A
217 230parallel
Strand 27
A
190 192parallel
Strand 28
A
168 170parallel
Strand 29
A
137 139parallel
Strand 30
A
113 115parallel
Strand 31
A
76 78parallel
Strand 32
A
49 51parallel
Strand 33
A
25 27parallel
Strand 34
A
49 51parallel
Strand 35
A
76 78parallel
Strand 36
A
113 115parallel
Strand 37
A
137 139parallel
Strand 38
A
168 170parallel
Strand 39
A
190 192parallel
Strand 40
A
217 230parallel
Strand 41
A
197 202parallel
Strand 42
A
176 187parallel
Strand 43
A
207 214parallel
Strand 44
A
237 244parallel
Strand 45
A
275 280parallel
Strand 46
A
303 304parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
306 308first strand
Strand 2
A
328 330parallel
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