Analysis of interatomic Contacts of Structural Units in PDB entry:
1KCM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1KCM entry

There is 1 chain in PDB entry 1KCM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 2GLU 257
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1KCM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 31Right-handed alpha
Helix 2
2
A
66 69Right-handed 310
Helix 3
3
A
70 75Right-handed alpha
Helix 4
4
A
104 106Right-handed 310
Helix 5
5
A
130 135Right-handed alpha
Helix 6
6
A
146 150Right-handed 310
Helix 7
7
A
151 155Right-handed 310
Helix 8
8
A
156 160Right-handed 310
Helix 9
9
A
177 183Right-handed alpha
Helix 10
10
A
206 232Right-handed alpha
Helix 11
11
A
232 237Right-handed alpha
Helix 12
12
A
240 254Right-handed alpha
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There is 1 sheet ( A) in PDB entry 1KCM.

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 49first strand
Strand 2
A
55 64anti-parallel
Strand 3
A
83 91anti-parallel
Strand 4
A
94 101anti-parallel
Strand 5
A
108 117anti-parallel
Strand 6
A
191 201anti-parallel
Strand 7
A
3 11anti-parallel
Strand 8
A
138 142parallel
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