Analysis of interatomic Contacts of Structural Units in PDB entry:
1KD7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1KD7 entry

There are 6 chains in PDB entry 1KD7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 142	LEU 285
B	VAL 142	LEU 285
C	VAL 142	LEU 285
K	VAL 142	LEU 285
L	VAL 142	LEU 285
M	VAL 142	LEU 285

There are no helices in PDB entry 1KD7

There are 18 sheets in PDB entry 1KD7. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	168	174	first strand
Strand 2	A	146	151	anti-parallel
Strand 3	A	278	283	anti-parallel
Strand 4	A	191	201	anti-parallel
Strand 5	A	243	253	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	158	160	first strand
Strand 2	A	163	165	anti-parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	179	180	first strand
Strand 2	A	185	186	anti-parallel
Strand 3	A	258	262	anti-parallel
Strand 4	A	207	215	anti-parallel
Strand 5	A	226	235	anti-parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	168	174	first strand
Strand 2	B	146	151	anti-parallel
Strand 3	B	278	283	anti-parallel
Strand 4	B	191	201	anti-parallel
Strand 5	B	243	253	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	158	160	first strand
Strand 2	B	163	165	anti-parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	179	180	first strand
Strand 2	B	185	186	anti-parallel
Strand 3	B	258	262	anti-parallel
Strand 4	B	207	215	anti-parallel
Strand 5	B	226	235	anti-parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	168	174	first strand
Strand 2	C	146	151	anti-parallel
Strand 3	C	278	283	anti-parallel
Strand 4	C	191	201	anti-parallel
Strand 5	C	243	253	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	226	235	first strand
Strand 2	C	207	215	anti-parallel
Strand 3	C	258	263	anti-parallel
Strand 4	C	163	165	anti-parallel
Strand 5	C	158	160	anti-parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	226	235	first strand
Strand 2	C	207	215	anti-parallel
Strand 3	C	258	263	anti-parallel
Strand 4	C	185	186	anti-parallel
Strand 5	C	179	180	anti-parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	168	174	first strand
Strand 2	K	146	151	anti-parallel
Strand 3	K	278	283	anti-parallel
Strand 4	K	191	201	anti-parallel
Strand 5	K	243	253	anti-parallel

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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	226	235	first strand
Strand 2	K	207	215	anti-parallel
Strand 3	K	258	263	anti-parallel
Strand 4	K	163	165	anti-parallel
Strand 5	K	158	160	anti-parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	226	235	first strand
Strand 2	K	207	215	anti-parallel
Strand 3	K	258	263	anti-parallel
Strand 4	K	185	186	anti-parallel
Strand 5	K	179	180	anti-parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	168	174	first strand
Strand 2	L	146	151	anti-parallel
Strand 3	L	278	283	anti-parallel
Strand 4	L	191	201	anti-parallel
Strand 5	L	243	253	anti-parallel

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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	226	235	first strand
Strand 2	L	207	215	anti-parallel
Strand 3	L	258	263	anti-parallel
Strand 4	L	163	165	anti-parallel
Strand 5	L	158	160	anti-parallel

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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	226	235	first strand
Strand 2	L	207	215	anti-parallel
Strand 3	L	258	263	anti-parallel
Strand 4	L	185	186	anti-parallel
Strand 5	L	179	180	anti-parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	168	174	first strand
Strand 2	M	146	151	anti-parallel
Strand 3	M	278	283	anti-parallel
Strand 4	M	191	201	anti-parallel
Strand 5	M	243	253	anti-parallel

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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	226	235	first strand
Strand 2	M	207	215	anti-parallel
Strand 3	M	258	263	anti-parallel
Strand 4	M	163	165	anti-parallel
Strand 5	M	158	160	anti-parallel

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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	226	235	first strand
Strand 2	M	207	215	anti-parallel
Strand 3	M	258	263	anti-parallel
Strand 4	M	185	186	anti-parallel
Strand 5	M	179	180	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1KD7

Analysis of interatomic Contacts of Structural Units in PDB entry:
1KD7