Analysis of interatomic Contacts of Structural Units in PDB entry:
1KDG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1KDG entry

There are 2 chains in PDB entry 1KDG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 215PRO 755
B
 PRO 210PRO 755
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 1KDG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
225 238Right-handed alpha
Helix 2
2
A
252 256Right-handed 310
Helix 3
3
A
261 268Right-handed 310
Helix 4
4
A
274 283Right-handed 310
Helix 5
5
A
303 308Right-handed 310
Helix 6
6
A
317 326Right-handed 310
Helix 7
7
A
328 332Right-handed 310
Helix 8
8
A
334 345Right-handed alpha
Helix 9
9
A
360 372Right-handed alpha
Helix 10
10
A
379 383Right-handed 310
Helix 11
11
A
404 409Right-handed alpha
Helix 12
12
A
409 416Right-handed alpha
Helix 13
13
A
449 451Right-handed 310
Helix 14
14
A
466 478Right-handed alpha
Helix 15
15
A
482 491Right-handed alpha
Helix 16
16
A
492 499Right-handed alpha
Helix 17
17
A
501 505Right-handed 310
Helix 18
18
A
531 536Right-handed 310
Helix 19
19
A
543 554Right-handed alpha
Helix 20
20
A
556 560Right-handed 310
Helix 21
21
A
599 601Right-handed 310
Helix 22
22
A
638 653Right-handed alpha
Helix 23
23
A
655 659Right-handed 310
Helix 24
24
A
672 680Right-handed alpha
Helix 25
25
A
681 686Right-handed 310
Helix 26
26
A
721 725Right-handed 310
Helix 27
27
A
733 751Right-handed alpha
Helix 28
28
B
225 238Right-handed alpha
Helix 29
29
B
252 256Right-handed 310
Helix 30
30
B
261 265Right-handed 310
Helix 31
31
B
274 283Right-handed 310
Helix 32
32
B
303 308Right-handed 310
Helix 33
33
B
317 326Right-handed 310
Helix 34
34
B
328 332Right-handed 310
Helix 35
35
B
334 345Right-handed alpha
Helix 36
36
B
360 372Right-handed alpha
Helix 37
37
B
379 383Right-handed 310
Helix 38
38
B
404 409Right-handed alpha
Helix 39
39
B
409 416Right-handed alpha
Helix 40
40
B
449 451Right-handed 310
Helix 41
41
B
466 477Right-handed alpha
Helix 42
42
B
482 491Right-handed alpha
Helix 43
43
B
492 499Right-handed alpha
Helix 44
44
B
501 505Right-handed 310
Helix 45
45
B
531 536Right-handed 310
Helix 46
46
B
543 554Right-handed alpha
Helix 47
47
B
556 560Right-handed 310
Helix 48
48
B
599 601Right-handed 310
Helix 49
49
B
638 654Right-handed alpha
Helix 50
50
B
655 659Right-handed 310
Helix 51
51
B
672 680Right-handed alpha
Helix 52
52
B
681 686Right-handed 310
Helix 53
53
B
721 725Right-handed 310
Helix 54
54
B
733 751Right-handed alpha
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There are 10 sheets in PDB entry 1KDG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
428 434first strand
Strand 2
A
437 443anti-parallel
Strand 3
A
453 464anti-parallel
Strand 4
A
217 222parallel
Strand 5
A
242 245parallel
Strand 6
A
420 423parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
428 434first strand
Strand 2
A
437 443anti-parallel
Strand 3
A
453 464anti-parallel
Strand 4
A
717 719parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
376 377first strand
Strand 2
A
390 393parallel
Strand 3
A
565 572anti-parallel
Strand 4
A
578 587anti-parallel
Strand 5
A
603 610anti-parallel
Strand 6
A
520 525anti-parallel
Strand 7
A
663 666anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
398 399first strand
Strand 2
A
402 403anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
619 622first strand
Strand 2
A
628 632anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
428 434first strand
Strand 2
B
437 443anti-parallel
Strand 3
B
453 464anti-parallel
Strand 4
B
217 222parallel
Strand 5
B
242 246parallel
Strand 6
B
420 424parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
428 434first strand
Strand 2
B
437 443anti-parallel
Strand 3
B
453 464anti-parallel
Strand 4
B
717 719parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
376 377first strand
Strand 2
B
390 393parallel
Strand 3
B
565 571anti-parallel
Strand 4
B
579 587anti-parallel
Strand 5
B
603 610anti-parallel
Strand 6
B
520 525anti-parallel
Strand 7
B
663 666anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
398 399first strand
Strand 2
B
402 403anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
619 622first strand
Strand 2
B
628 632anti-parallel
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