Analysis of interatomic Contacts of Structural Units in PDB entry:
1KDX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1KDX entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 3 chains in PDB entry 1KDX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 586GLU 666
B
 THR 119PRO 132
B
 TYR 134PRO 146
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 1KDX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
591 594Right-handed 310
Helix 2
2
A
597 611Right-handed alpha
Helix 3
3
A
617 621Right-handed 310
Helix 4
4
A
623 640Right-handed alpha
Helix 5
5
A
646 662Right-handed alpha
Helix 6
6
B
120 129Right-handed alpha
Helix 7
7
B
132 144Right-handed alpha
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There are no sheets in PDB entry 1KDX
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il