Analysis of interatomic Contacts of Structural Units in PDB entry:
1KFW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1KFW entry

There is 1 chain in PDB entry 1KFW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
PRO 10PRO 444
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 1KFW. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
27 30Right-handed 310
Helix 2
2
A
35 42Right-handed alpha
Helix 3
3
A
44 48Right-handed 310
Helix 4
4
A
85 90Right-handed alpha
Helix 5
5
A
111 122Right-handed alpha
Helix 6
6
A
141 146Right-handed alpha
Helix 7
7
A
148 164Right-handed alpha
Helix 8
8
A
209 232Right-handed alpha
Helix 9
9
A
245 253Right-handed alpha
Helix 10
10
A
256 262Right-handed 310
Helix 11
11
A
297 301Right-handed 310
Helix 12
12
A
303 314Right-handed alpha
Helix 13
13
A
317 319Right-handed 310
Helix 14
14
A
359 363Right-handed alpha
Helix 15
15
A
390 404Right-handed alpha
Helix 16
16
A
413 417Right-handed 310
Helix 17
17
A
420 433Right-handed alpha
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There are 5 sheets in PDB entry 1KFW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
19 25first strand
Strand 2
A
50 56parallel
Strand 3
A
128 134parallel
Strand 4
A
186 190parallel
Strand 5
A
237 242parallel
Strand 6
A
265 268parallel
Strand 7
A
321 326parallel
Strand 8
A
408 412parallel
Strand 9
A
19 25parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
69 70first strand
Strand 2
A
83 84anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
168 171first strand
Strand 2
A
174 176anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
367 371first strand
Strand 2
A
376 380anti-parallel
Strand 3
A
385 388anti-parallel
Strand 4
A
328 333anti-parallel
Strand 5
A
346 347anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
367 371first strand
Strand 2
A
376 380anti-parallel
Strand 3
A
385 388anti-parallel
Strand 4
A
328 333anti-parallel
Strand 5
A
356 358anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il