Analysis of interatomic Contacts of Structural Units in PDB entry:
1KGJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1KGJ entry

There are 4 chains in PDB entry 1KGJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 5ASN 127
B
 GLU 207ASN 327
C
 GLU 407ASN 527
D
 SER 608ASN 727
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 1KGJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
74 83Right-handed alpha
Helix 2
2
B
275 281Right-handed alpha
Helix 3
3
C
474 482Right-handed alpha
Helix 4
4
D
674 682Right-handed alpha
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There are 4 sheets in PDB entry 1KGJ. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 55first strand
Strand 2
A
12 18anti-parallel
Strand 3
A
23 24anti-parallel
Strand 4
A
12 18anti-parallel
Strand 5
A
105 112parallel
Strand 6
A
115 120anti-parallel
Strand 7
B
315 323anti-parallel
Strand 8
B
304 312anti-parallel
Strand 9
B
212 218parallel
Strand 10
B
223 224anti-parallel
Strand 11
B
212 218anti-parallel
Strand 12
B
254 255anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 48first strand
Strand 2
A
29 35anti-parallel
Strand 3
A
67 73anti-parallel
Strand 4
A
88 97anti-parallel
Strand 5
B
288 297anti-parallel
Strand 6
B
267 274anti-parallel
Strand 7
B
229 235anti-parallel
Strand 8
B
241 248anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
441 448first strand
Strand 2
C
429 435anti-parallel
Strand 3
C
467 473anti-parallel
Strand 4
C
491 497anti-parallel
Strand 5
D
688 697anti-parallel
Strand 6
D
667 673anti-parallel
Strand 7
D
629 635anti-parallel
Strand 8
D
641 648anti-parallel
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There are 12 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
654 655first strand
Strand 2
D
612 618anti-parallel
Strand 3
D
623 624anti-parallel
Strand 4
D
612 618anti-parallel
Strand 5
D
705 711parallel
Strand 6
D
715 722anti-parallel
Strand 7
C
515 520anti-parallel
Strand 8
C
505 512anti-parallel
Strand 9
C
412 418parallel
Strand 10
C
423 424anti-parallel
Strand 11
C
412 418anti-parallel
Strand 12
C
454 455anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il