Analysis of interatomic Contacts of Structural Units in PDB entry:
1KGQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1KGQ entry

There is 1 chain in PDB entry 1KGQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 274
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 8 helices in PDB entry 1KGQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1 14Right-handed alpha
Helix 2
2
A
15 18Right-handed 310
Helix 3
3
A
24 40Right-handed alpha
Helix 4
4
A
56 70Right-handed alpha
Helix 5
5
A
88 93Right-handed 310
Helix 6
6
A
94 102Right-handed alpha
Helix 7
7
A
257 265Right-handed alpha
Helix 8
8
A
267 271Right-handed 310
Back to top of page

There are 5 sheets in PDB entry 1KGQ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 49first strand
Strand 2
A
52 55anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 76first strand
Strand 2
A
81 84anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 105first strand
Strand 2
A
122 123parallel
Strand 3
A
139 140parallel
Strand 4
A
157 158parallel
Strand 5
A
183 184parallel
Strand 6
A
201 202parallel
Strand 7
A
231 239parallel
Strand 8
A
246 255anti-parallel
Strand 9
A
214 216parallel
Strand 10
A
222 223anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 111first strand
Strand 2
A
126 128parallel
Strand 3
A
144 146parallel
Strand 4
A
163 164parallel
Strand 5
A
189 190parallel
Strand 6
A
207 208parallel
Back to list of sheets
Back to top of page

There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 117first strand
Strand 2
A
133 134parallel
Strand 3
A
151 152parallel
Strand 4
A
177 178parallel
Strand 5
A
195 196parallel
Strand 6
A
226 227parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il