Analysis of interatomic Contacts of Structural Units in PDB entry:
1KGZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1KGZ entry

There are 2 chains in PDB entry 1KGZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 12ARG 344
B
 THR 12ARG 344
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 1KGZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 21Right-handed alpha
Helix 2
2
A
27 40Right-handed alpha
Helix 3
3
A
44 59Right-handed alpha
Helix 4
4
A
61 76Right-handed alpha
Helix 5
5
A
101 112Right-handed alpha
Helix 6
6
A
133 139Right-handed alpha
Helix 7
7
A
146 158Right-handed alpha
Helix 8
8
A
163 168Right-handed alpha
Helix 9
9
A
169 173Right-handed 310
Helix 10
10
A
174 182Right-handed alpha
Helix 11
11
A
185 191Right-handed alpha
Helix 12
12
A
192 195Right-handed 310
Helix 13
13
A
211 222Right-handed alpha
Helix 14
14
A
260 265Right-handed 310
Helix 15
15
A
270 274Right-handed 310
Helix 16
16
A
278 291Right-handed alpha
Helix 17
17
A
295 300Right-handed alpha
Helix 18
18
A
302 311Right-handed alpha
Helix 19
19
A
312 314Right-handed 310
Helix 20
20
A
317 331Right-handed alpha
Helix 21
21
A
335 342Right-handed alpha
Helix 22
22
B
13 21Right-handed alpha
Helix 23
23
B
27 39Right-handed alpha
Helix 24
24
B
44 59Right-handed alpha
Helix 25
25
B
61 76Right-handed alpha
Helix 26
26
B
101 113Right-handed alpha
Helix 27
27
B
131 140Right-handed alpha
Helix 28
28
B
146 158Right-handed alpha
Helix 29
29
B
164 168Right-handed alpha
Helix 30
30
B
169 173Right-handed 310
Helix 31
31
B
174 182Right-handed alpha
Helix 32
32
B
186 191Right-handed alpha
Helix 33
33
B
192 194Right-handed 310
Helix 34
34
B
208 210Right-handed 310
Helix 35
35
B
211 222Right-handed alpha
Helix 36
36
B
260 265Right-handed 310
Helix 37
37
B
271 275Right-handed 310
Helix 38
38
B
278 291Right-handed alpha
Helix 39
39
B
295 300Right-handed alpha
Helix 40
40
B
302 310Right-handed alpha
Helix 41
41
B
311 314Right-handed 310
Helix 42
42
B
317 331Right-handed alpha
Helix 43
43
B
332 343Right-handed alpha
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There are 4 sheets in PDB entry 1KGZ. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 91first strand
Strand 2
A
201 205parallel
Strand 3
A
226 231parallel
Strand 4
A
244 250anti-parallel
Strand 5
A
253 259anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 120first strand
Strand 2
A
159 162parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 91first strand
Strand 2
B
201 205parallel
Strand 3
B
226 231parallel
Strand 4
B
244 250anti-parallel
Strand 5
B
253 259anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
117 121first strand
Strand 2
B
159 163parallel
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