Analysis of interatomic Contacts of Structural Units in PDB entry:
1KJW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1KJW entry

There is 1 chain in PDB entry 1KJW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 430LEU 724
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 1KJW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
440 446Right-handed alpha
Helix 2
2
A
490 500Right-handed alpha
Helix 3
3
A
543 555Right-handed alpha
Helix 4
4
A
585 595Right-handed alpha
Helix 5
5
A
613 622Right-handed alpha
Helix 6
6
A
633 641Right-handed alpha
Helix 7
7
A
654 662Right-handed alpha
Helix 8
8
A
666 685Right-handed alpha
Helix 9
9
A
686 688Right-handed 310
Helix 10
10
A
696 712Right-handed alpha
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There are 3 sheets in PDB entry 1KJW. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
486 489first strand
Strand 2
A
470 475anti-parallel
Strand 3
A
459 464anti-parallel
Strand 4
A
431 435anti-parallel
Strand 5
A
523 530anti-parallel
Strand 6
A
715 719anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
559 560first strand
Strand 2
A
625 628parallel
Strand 3
A
537 540parallel
Strand 4
A
646 650parallel
Strand 5
A
690 692parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
581 582first strand
Strand 2
A
565 566parallel
Strand 3
A
607 612anti-parallel
Strand 4
A
598 604anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il