Analysis of interatomic Contacts of Structural Units in PDB entry:
1KJX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1KJX entry

There is 1 chain in PDB entry 1KJX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1ALA 431
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 1KJX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 24Right-handed alpha
Helix 2
2
A
75 88Right-handed alpha
Helix 3
3
A
92 97Right-handed alpha
Helix 4
4
A
108 121Right-handed alpha
Helix 5
5
A
132 142Right-handed alpha
Helix 6
6
A
147 152Right-handed 310
Helix 7
7
A
153 174Right-handed alpha
Helix 8
8
A
182 192Right-handed alpha
Helix 9
9
A
193 200Right-handed alpha
Helix 10
10
A
203 215Right-handed alpha
Helix 11
11
A
227 229Right-handed 310
Helix 12
12
A
246 252Right-handed alpha
Helix 13
13
A
255 259Right-handed 310
Helix 14
14
A
284 294Right-handed alpha
Helix 15
15
A
311 322Right-handed alpha
Helix 16
16
A
332 336Right-handed 310
Helix 17
17
A
362 366Right-handed 310
Helix 18
18
A
387 391Right-handed 310
Helix 19
19
A
392 407Right-handed alpha
Helix 20
20
A
427 431Right-handed 310
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There are 6 sheets in PDB entry 1KJX. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 68first strand
Strand 2
A
29 32parallel
Strand 3
A
218 225parallel
Strand 4
A
3 8parallel
Strand 5
A
261 267parallel
Strand 6
A
324 330parallel
Strand 7
A
412 414parallel
Strand 8
A
422 424anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 45first strand
Strand 2
A
48 52anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 100first strand
Strand 2
A
201 202parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 272first strand
Strand 2
A
306 309anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
340 341first strand
Strand 2
A
375 376anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
354 355first strand
Strand 2
A
344 348anti-parallel
Strand 3
A
369 372anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il